Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01249 ATGTCTAATCATTTTCCCCTAGAAATCGTGGAGGAAATTCTTCACAGACTTCCTGTCAAGTCTATTGTGAAATGCACCTCCGTTTGCAAAGCTTGGAACTCTCTCATCACTCGTCAAACTTTCATTTTTGATAATCTCAACCGCACAATTCAAGCTCCCAATCACAACAGCTCCCTCCTTTTTCACTTTAGAAAACTCATATCGCCTGGTGACCCATGTTCTCTGCATCAGGAAACTTACTCGTTGTACTCCTCTGTTAATCAGCAGACTGATCAACTCTCTGTTGAGAGGTTCCCACGCTCTCTTTTATCTGAGCCTAATCGTTATGCGCTCTTTGTTGGCGCATGCAATGGCCTCGTATGTTCTGCCGACTTTTCACCATTAGAATCCTCTACTATCATTATCTGGAATCCCTCACTTCGGAAATATATCGTGCTTCCCAAACCAATCACCACCCGCAAGAAACGTGGCCGTCAATGTTTAGGCGGCTATGGTGACCCCAAGTATGATATCTTTTTTGGGTTTGGTTTTGATTCCAGGAATAACGATTACAAGGTAGTGAGACTGATGAATGACAGATGTACAAAAGATACTCCTTACGTTGAGGTGTACTCTCTTGCTTCTCATATTTGGAGGAGTATCTCTGTTACAGTTCCTCAATATTTCCTCGGTGGTACTACGTTGATATCCTCGGTGTTTCTGAATGGCGCATTACATTGGCTTGTTTTCCGCTACGCAGCCTACGATGAGGAAGGCTGTAGAATATGCTACAGGTTCATTTTATCATTTGATGTGATTCAAGAAACATTTAGAGAATTAACGTTACCACAACAGCAACCGGATGAAAAATCTTTTACATCAAGATTACTCCCCGTGGAAGGAGGCCATTTGCTTGCTATGGTAAATCATGTTTATGTGAAAAGGAGGAGGGAATGTGTGTTTTGTATTTGGGTGATGAAAGATTATGGTGTTACCAATTCTTGGACCGAAATATTTCGCTTGGATAGTGGACTTTATGGGGGCATATTTAAAGTATTAGCTTTAACTAGTAGTGGAAAAGTGGTCCTGATGCTTCATGGTGGAGCTGTAGTTTTAGTTGATCCAATCAAGGAATCGGTGGAGCCTGTGGGACTTGCGAGAGTGTCTGAAGTTTTTGTTTCATCTTTTGTTGAGAGTTTGTTTTTCCTGAACAAAGAACCTGATGTTTTGTCTTTCTAA 1218 0.4146 MSNHFPLEIVEEILHRLPVKSIVKCTSVCKAWNSLITRQTFIFDNLNRTIQAPNHNSSLLFHFRKLISPGDPCSLHQETYSLYSSVNQQTDQLSVERFPRSLLSEPNRYALFVGACNGLVCSADFSPLESSTIIIWNPSLRKYIVLPKPITTRKKRGRQCLGGYGDPKYDIFFGFGFDSRNNDYKVVRLMNDRCTKDTPYVEVYSLASHIWRSISVTVPQYFLGGTTLISSVFLNGALHWLVFRYAAYDEEGCRICYRFILSFDVIQETFRELTLPQQQPDEKSFTSRLLPVEGGHLLAMVNHVYVKRRRECVFCIWVMKDYGVTNSWTEIFRLDSGLYGGIFKVLALTSSGKVVLMLHGGAVVLVDPIKESVEPVGLARVSEVFVSSFVESLFFLNKEPDVLSF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01249 405 NCBIfam F-box protein interaction domain 115 358 IPR017451 -
Accr6g01249 405 SMART fbox_2 5 45 IPR001810 GO:0005515
Accr6g01249 405 Pfam F-box associated 231 338 IPR006527 -
Accr6g01249 405 CDD F-box_AtFBW1-like 5 41 - -
Accr6g01249 405 PANTHER OS02G0783600 PROTEIN 9 335 - -
Accr6g01249 405 Pfam F-box domain 5 39 IPR001810 GO:0005515
Accr6g01249 405 SUPERFAMILY F-box domain 4 42 IPR036047 GO:0005515
Accr6g01249 405 Gene3D - 1 59 - -
Accr6g01249 405 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01249 Accr-Chr6 38163432 38164649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01249 161 335 Carbohydrate Esterase AT1G25141 27.933 3.25e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01249 - - pcin:129288916 332.413