Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01240 ATGGCGGAGAAAGATGATGGTTTGGGCTTAGGGTTGAGCCTGAGCTTGGGACTGGGAATGAATCCTTCTTCTTCTTCTAAGGAAAGTTTCATGCAGAAGAAGATTTCTTCCCATACGGTTCTGAATCAGAGAGTTTCATGGAATGATATTTTCCAGTTACCAGATCGGAGCTGCGAGGCAAGGACGTTGCTTCGGGGAGTGGATGTTAATTTAGCACCGCCGCCGTTGACGGTGGTGGACTGTGACGACGAGAATGGCGTCTCCTCGCCGAACAGTACGGTGTCGAGCATCAGCGGAAAGCGGAGCGAGAGGGAGTCTATTGGTGGCGAGCATGAAGCCGAGCGTGCGTCTTGTTCTAGAGGGAGTGATGATGATGACGGCGGCGATGGCGTCGGAAGAGATGGTGACGGCGACGGTGACGGCGATACTTCCAGGAAGAAACTTCGGCTGTCGAAGGAACAATCGATTACGCTGGAGGAAACGTTCAAGGAACACAATACCCTCAATCCGAAGCAAAAACAGGAATTGGCCGAAAAGCTGAATCTGAGGCCGAGGCAAGTGGAAGTGTGGTTTCAAAACAGAAGGGCAAGGACTAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTAAGGAGATGTTGTGAGACTTTGACTGAAGAGAATAGGAGGCTGCAAAAGGAAGTGCAAGAGCTTAGGGCACTAAAACTATCCCCACAACTCTACATGCACATGAACCCTCCAACCACTCTCACAATGTGCCCTTCATGTGAGCGCGTCGCAGTCTCGTCAACATCCTCCTCCTCTTCAACAGCCACTGCTGGTGGAGCTCCTCCTGCGATGATGGCTTCGTCCAACTCAGCCCCATTGAGCTCCAGCATTCAAAGGCCGGTGCCCGTCCTCCCTTGGGCGGTTAACTCAAATCGAAACCGCCCAGCAGACCGGCCGTAA 948 0.519 MAEKDDGLGLGLSLSLGLGMNPSSSSKESFMQKKISSHTVLNQRVSWNDIFQLPDRSCEARTLLRGVDVNLAPPPLTVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDDGGDGVGRDGDGDGDGDTSRKKLRLSKEQSITLEETFKEHNTLNPKQKQELAEKLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTSSSSSTATAGGAPPAMMASSNSAPLSSSIQRPVPVLPWAVNSNRNRPADRP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01240 315 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Accr6g01240 315 FunFam Homeobox-leucine zipper protein 18 132 206 - -
Accr6g01240 315 MobiDBLite consensus disorder prediction 84 102 - -
Accr6g01240 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 273 - -
Accr6g01240 315 SUPERFAMILY Homeodomain-like 131 202 IPR009057 -
Accr6g01240 315 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Accr6g01240 315 Coils Coil 207 237 - -
Accr6g01240 315 MobiDBLite consensus disorder prediction 266 315 - -
Accr6g01240 315 MobiDBLite consensus disorder prediction 103 152 - -
Accr6g01240 315 CDD homeodomain 145 202 IPR001356 GO:0003677
Accr6g01240 315 Gene3D - 135 205 - -
Accr6g01240 315 MobiDBLite consensus disorder prediction 79 152 - -
Accr6g01240 315 Pfam HD-ZIP protein N terminus 1 105 IPR006712 GO:0005634
Accr6g01240 315 SMART HOX_1 143 205 IPR001356 GO:0003677
Accr6g01240 315 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Accr6g01240 315 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Accr6g01240 315 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01240 Accr-Chr6 37938237 37940121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01240 23 312 Homeobox Transcription Factor Family AT3G60390 57.947 1.02e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr6g01240 HD-ZIP_N 7.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01240 K09338 - qsa:O6P43_026962 334.339