Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01198 ATGATTCCTAATCATTCTCCTTTCCAATCAGTTCAACAATACTTCATTGAAGATGATCCTTCCTTTATGGATCTCGTGAACGATGGATTCTTCTTCTCCGGCAACCCTACTTCGCCAGAGCAGGGTGTTAGTAGCTCCACTGGAGCAGTGTTTACCGGCGAGAATAATATGGATAACAACGCTGTGAGACCAGGTGGTAATGACACAGGATCTGTGGCGCGTGGAAAGAACGTGCCACCGAGATGGAGGAATTACCGAGGTGTGAGGCGGCGGCCGTGGGGGAAGTTCGTAGCAGAGATCCGGGACCCGAAGAGGAACGGTGCGAGGTCGTGGTTGGGAACTTATGAGAGAGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCGAGATGCATGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATCGGATCAGAACAACCACTGCCGGAGCCGACAAGAGTGGTGGCTGGACAGAAGCGGCGGGGCTCGTTGGAACCTTCATCGCCGTCAAACAGTACATCTGAGGATGATGGATCTCAAGGGTCAAGTAGGAAGAAGAGCCTCACGGGACTATTGAACAAGCTAGCAACAAATAGAAGCCACGTCAGATTGGGTTGA 627 0.5072 MIPNHSPFQSVQQYFIEDDPSFMDLVNDGFFFSGNPTSPEQGVSSSTGAVFTGENNMDNNAVRPGGNDTGSVARGKNVPPRWRNYRGVRRRPWGKFVAEIRDPKRNGARSWLGTYEREEDAALAYDRAAFEMHGRKAKLNFPHLIGSEQPLPEPTRVVAGQKRRGSLEPSSPSNSTSEDDGSQGSSRKKSLTGLLNKLATNRSHVRLG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01198 208 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Accr6g01198 208 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Accr6g01198 208 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Accr6g01198 208 PANTHER DNA-BINDING DOMAIN 61 182 IPR044808 GO:0003700|GO:0009873
Accr6g01198 208 FunFam Ethylene-responsive transcription factor 2 83 143 - -
Accr6g01198 208 MobiDBLite consensus disorder prediction 166 199 - -
Accr6g01198 208 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Accr6g01198 208 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Accr6g01198 208 CDD AP2 84 144 IPR001471 GO:0003700|GO:0006355
Accr6g01198 208 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Accr6g01198 208 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Accr6g01198 208 MobiDBLite consensus disorder prediction 145 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01198 Accr-Chr6 35521868 35522494 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01198 85 178 AP2-EREBP Transcription Factor Family AT2G44840 69.149 1.29e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr6g01198 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01198 K09286 - pcin:129296372 213.772