Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01196 ATGCTTCCTAATCATTCTCCTTTCCAAGCAGTTCAACAATACTTCATTGAAGATGATCCTTCCTTTATGGATCTCATGAATGATGGATTCTTCTTCTCGAGCGACCCTACTTCGCCAGAGCAGGGTGTTAGTATCTCCACTGGGGCAGTGTTTTCCGGCGAGAATAATGATAACAACGCTGTGAGATCTGGTGGTAATGACACAGGATCTGTGGCGCGTGAAGGGAACGCACCACCGATATGGAGGAATTACCGAGGTGTGAGGCGGCGGCCGTGGGGGAAGTTCGCAGCAGAGATCCGGGACCCGAAGAGAAACGGTGCGAGGACGTGGTTGGGAACTTATGAGAGAGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCCAGATACATGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATCCCATCAGAACAACCACTGCCGGAGCCGACAAGAGTGGTGGCTGGTCAGAAGCGGCGGGGCTCCTCAGAACCTTCATCGCCGTCAAACAGTACATCTGAGGATGATGGATCTCAAGGGTCAAGTAGGAAGAAGAGCCTCACGGGACTATTAAACAAGTTAGCAACAAATAGAAGCCACGTCAGATTGGGTTGA 624 0.5016 MLPNHSPFQAVQQYFIEDDPSFMDLMNDGFFFSSDPTSPEQGVSISTGAVFSGENNDNNAVRSGGNDTGSVAREGNAPPIWRNYRGVRRRPWGKFAAEIRDPKRNGARTWLGTYEREEDAALAYDRAAFQIHGRKAKLNFPHLIPSEQPLPEPTRVVAGQKRRGSSEPSSPSNSTSEDDGSQGSSRKKSLTGLLNKLATNRSHVRLG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01196 207 MobiDBLite consensus disorder prediction 52 70 - -
Accr6g01196 207 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Accr6g01196 207 MobiDBLite consensus disorder prediction 163 198 - -
Accr6g01196 207 FunFam Ethylene-responsive transcription factor 2 82 142 - -
Accr6g01196 207 PANTHER DNA-BINDING DOMAIN 62 181 IPR044808 GO:0003700|GO:0009873
Accr6g01196 207 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Accr6g01196 207 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Accr6g01196 207 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Accr6g01196 207 CDD AP2 83 143 IPR001471 GO:0003700|GO:0006355
Accr6g01196 207 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Accr6g01196 207 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Accr6g01196 207 MobiDBLite consensus disorder prediction 52 78 - -
Accr6g01196 207 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Accr6g01196 207 MobiDBLite consensus disorder prediction 142 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01196 Accr-Chr6 35384860 35385483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01196 84 177 AP2-EREBP Transcription Factor Family AT2G44840 70.213 5.41e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr6g01196 AP2 6.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01196 K09286 - pcin:129296372 211.846