Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01190 ATGATTCCAAGTCATTCTCCTTTCCAATCAGTTCAACAATACTTAATTGAAGATGATCCTTCCTTTTTGGATCTCATGAATGATGGATTCTCCTTCTCCCTCAACCTTACTTTGCAGGAGCAGGGTGTTAGTAGCTCCACTGGTGCAGTGTTTTCGGGCGAGAATAATGATAACAACGCTGTGAGACCAGGTGGTAATGACACAGGATTTGTGGCGCGTGAAGGAAACGCACCACTGAGATGGAGGAATTGCCGAGGCGTGAGGCGGCGGCCATGGGGGAAGTTCACGGCAGAGATTCGGGACCCGAAGAGGAACGGTACGAGGACGTGGCTGGGAACTTATGAGAGAGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCCAGATGCATGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATTGGATTGGAACAACCACTGCTGGAGCCGCGAAGAGTGGTGGCTGGACAGAAGTCACGGGCCTTGCTGGAACTTTCATTGCCGTCAAACATTACATCTGAGGATGATGGATCTCAAGGGACAAGTAGGAAGAAGAGCCTCACCGGACTATTGAACAAGTTAGCAACAAAAAGAAGCCACGTCAGATTGGGTTGCTATTATGAGTAA 636 0.4843 MIPSHSPFQSVQQYLIEDDPSFLDLMNDGFSFSLNLTLQEQGVSSSTGAVFSGENNDNNAVRPGGNDTGFVAREGNAPLRWRNCRGVRRRPWGKFTAEIRDPKRNGTRTWLGTYEREEDAALAYDRAAFQMHGRKAKLNFPHLIGLEQPLLEPRRVVAGQKSRALLELSLPSNITSEDDGSQGTSRKKSLTGLLNKLATKRSHVRLGCYYE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01190 211 PANTHER DNA-BINDING DOMAIN 66 175 IPR044808 GO:0003700|GO:0009873
Accr6g01190 211 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Accr6g01190 211 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Accr6g01190 211 Pfam AP2 domain 85 133 IPR001471 GO:0003700|GO:0006355
Accr6g01190 211 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Accr6g01190 211 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Accr6g01190 211 MobiDBLite consensus disorder prediction 46 73 - -
Accr6g01190 211 MobiDBLite consensus disorder prediction 46 63 - -
Accr6g01190 211 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Accr6g01190 211 Gene3D AP2/ERF domain 84 142 IPR036955 GO:0003700|GO:0006355
Accr6g01190 211 CDD AP2 85 143 IPR001471 GO:0003700|GO:0006355
Accr6g01190 211 FunFam Ethylene-responsive transcription factor 2 83 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01190 Accr-Chr6 35195094 35195729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01190 85 177 AP2-EREBP Transcription Factor Family AT2G44840 64.516 1.79e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr6g01190 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01190 K09286 - pcin:129296372 202.601