Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01185 ATGTCCCAAGTTTTCCATTATTCCTCACCTGATTCTACTGAACATTCTTGCAGTACTTTAGAAGCAATCCGACATCACCTTCTTGGTAACGAAATGGCAGACTTGCCACGGCTATATTCTCTGGCAACAACCTCCGATGACATCCCGGTTCACAGCCAGAGCCCGCCAGTTGTGTATGACGGTCGTTATGTCAATGAACCAGCTCCACAAGTTTGCACCATTGATGATAAGAATATTAAAATAGAAGATGCGGTGGCGGCTCGTGGTGATGAGTATTGTAATGTCGCACCACCGGTTGAGCAGCAGGGATACCGGGGTGTTAGGCGGCGGCCATGGGGGAAATACGCAGCGGAGATCAGGGATTCAGCGAAAAATGGTGCTAGGGTTTGGCTTGGAACTTATGATACGGCGGAGGATGCAGCTATAGCTTATGATCGAGCAGCTTATGAGATGCGTGGAGCTAAAGCCAAGCTTAATTTTCCTCACCTTGTGGGATCAAATGTGTGGGAGTCAGTTCGAGCCACTCGGAAGCGGAATGACCTCACCATGGCCAGCGGCAGCGGCGGCGGCAAGGAGTGTTCTTCAAAGCTTAAGCGAAGGAAGAGTGAAACGTGA 615 0.5008 MSQVFHYSSPDSTEHSCSTLEAIRHHLLGNEMADLPRLYSLATTSDDIPVHSQSPPVVYDGRYVNEPAPQVCTIDDKNIKIEDAVAARGDEYCNVAPPVEQQGYRGVRRRPWGKYAAEIRDSAKNGARVWLGTYDTAEDAAIAYDRAAYEMRGAKAKLNFPHLVGSNVWESVRATRKRNDLTMASGSGGGKECSSKLKRRKSET 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01185 204 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Accr6g01185 204 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Accr6g01185 204 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Accr6g01185 204 FunFam Ethylene-responsive transcription factor 2 102 162 - -
Accr6g01185 204 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Accr6g01185 204 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Accr6g01185 204 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Accr6g01185 204 MobiDBLite consensus disorder prediction 179 204 - -
Accr6g01185 204 Pfam AP2 domain 103 153 IPR001471 GO:0003700|GO:0006355
Accr6g01185 204 SUPERFAMILY DNA-binding domain 103 162 IPR016177 GO:0003677
Accr6g01185 204 PANTHER DNA-BINDING DOMAIN 75 177 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01185 Accr-Chr6 34996674 34997288 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01185 96 178 AP2-EREBP Transcription Factor Family AT2G44840 69.880 4.46e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr6g01185 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01185 K09286 - pcin:129297492 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g01185 6 34996674 34997288 Accr6g01185 6 34996674 34997288 ECH