Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01078 ATGGCTTCTCCACCACCTTACACCTTAAACGTCGTCGGATCAGAGCCTGAATCCTTCACCGGAACGACTTCTACCTCTGAGGATCAAGCTTCTCCACAACATTTCTCTTCGGCTTTTCAGAATCTTAACAGCAGCGTTCTCATTATTGTTATTGTCCTCGCTGTAACCTTCATTATATCGCTCTCTATCTGCCTGCTCCTTCGTCACATCAATCTCCGGTGCCTCCGACGGCTATCTCGATCATCTTTTTCTTCGTCATCCAGGAGGAATGCAACGCCTGCGACAGCAACAGCGACTGGGACTACCATGCCTGTTTTCTCTTCCAGCCGTCGCGTCTCGCCGGAGATTACGTCGGCTTCCATTATTGATTCGCTTCCGATGTTCGAGTTTTCTTCTATCATTCGTCGCTCTTCTGCCTCTGATACTACCGGTGGCGACTGTGCGGTCTGCCTCTCGAAATTTGAGCAGCGAGACCTCCTCCGTCTTCTGCCGCTGTGCTGTCACGCCTTCCATGTTGAATGCATTGACACATGGCTTCAGTCCAATTTGACTTGTCCGCTGTGTCGATCTGCGATTTTTGCCTCTGATTCGGAGCTAATGAAGGTTTTGCAATCGTCGCTCGAAGACAGTGGCGGCAGCAATAGTTTCCGGCTAGAAATCGGGAACATCAGCCGCCGTGGATCAGCACCACCAGACGTTGCCGAAGACGCGCGTGCGAGGTCGAGGTCGAGGTCTTATTCCGTTGGCTCATTTGAGTATTTCGTTGACGAGGACTTCGAGGTTCCTATCCGCCACGCTCACCAGAGAAGCGTATCGGATAATAAAGACGAACCGGTCACTGTAGAATCTCAATCGGCGGCGGCGGCGGCTCAGTCCGCCCATGAAGCGAGTTTAGCCGCGGATGTTTCCGGAAGCGGGAGGAGCTGGTGGCTGAAGGAATACATAGACAGGCTGTCATCTTCTATATCATCCCGAACAGTATCCTTTAGAGGCTCTGGTAGGTTCTTTACCAACGGCAATGCTAGCCACCGGAGCGACGCCGGCATCTCCGCCGAGGACTGCGACTTGGAAGCAATGAGATTAGGCGAAGAAATTAGCGAAACTTTTCGATGGCTGTCAGGGGTATGA 1128 0.5222 MASPPPYTLNVVGSEPESFTGTTSTSEDQASPQHFSSAFQNLNSSVLIIVIVLAVTFIISLSICLLLRHINLRCLRRLSRSSFSSSSRRNATPATATATGTTMPVFSSSRRVSPEITSASIIDSLPMFEFSSIIRRSSASDTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLQSNLTCPLCRSAIFASDSELMKVLQSSLEDSGGSNSFRLEIGNISRRGSAPPDVAEDARARSRSRSYSVGSFEYFVDEDFEVPIRHAHQRSVSDNKDEPVTVESQSAAAAAQSAHEASLAADVSGSGRSWWLKEYIDRLSSSISSRTVSFRGSGRFFTNGNASHRSDAGISAEDCDLEAMRLGEEISETFRWLSGV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01078 375 SUPERFAMILY RING/U-box 122 194 - -
Accr6g01078 375 Pfam Ring finger domain 146 189 IPR001841 -
Accr6g01078 375 MobiDBLite consensus disorder prediction 267 288 - -
Accr6g01078 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 41 276 - -
Accr6g01078 375 MobiDBLite consensus disorder prediction 13 30 - -
Accr6g01078 375 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Accr6g01078 375 FunFam E3 ubiquitin-protein ligase ATL6 106 195 - -
Accr6g01078 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 193 IPR013083 -
Accr6g01078 375 SMART ring_2 147 188 IPR001841 -
Accr6g01078 375 MobiDBLite consensus disorder prediction 1 30 - -
Accr6g01078 375 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01078 Accr-Chr6 30520264 30521391 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01078 120 194 C3H Transcription Factor Family AT2G18650 56.000 1.24e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01078 K10663 - qsa:O6P43_026856 367.081