Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01077 ATGGCTTCTCCACCACCTTACACCCTAAATGTAGTGGGATCAGAACCTCAATCCTTCACCGGAACAACTTCCACCTCTTATTATCAAGCTTCTTCGCAACATTCCTCTTCGGCTTCTCACAATATCAACACCAGCGTGCTCATTATTCTTATCGTCCTCGCAGTAACCTCAACTGTGTGGCTCTCTCTCTACCTGCTCCTTCGTCTCCTCAATCTCCAGTGCCTCCGACGGCCATCTCTGTCATATTTTTCGTCGTCATCCAGGAGGAATGCAACCCCTGCGACTGCGACTGCGACAACGAATGCGACTGAGACTGCGACTGCGACTGCCATGCCTGTTTTCTCTTCCAGCCGTCGCTTCTCGCTGGAGATTCCCTCGACTTCCACTATTGACTCGCTTCCGATGTTCGAGTTTTCTTCTATTACTCGTTGCTCTTCTGCCTGTGATACTACCGTTGGCGGCTGTGCGGTCTGCCTCTCGAAATTTGAGCAGCAAGACCTCCTCCGTCTTCTGCCGCTTTGCTGTCACGCTTTCCATGTTGAATGCATTGACACATGGCTTCAGTCCAATTTGACTTGTCCGCTGTGCCGGTCTGCGATTTTTGCCTCTGATTCGGAGCTAATGAAGGTTCTCCAATCGTCGCTCGACGACAGTGGCGGAAGCAATAGTTTCCGGCGAGAAATTGGGAACATCAGCCACCGTGGACCGGTACCACCAGACGAAGCCGGAGACCTGCGTGCGAGGTCGAGGTCTTATTCCGTTGGCTCATTTGAGTATTTCGTTGACGAGGACCTCGAGGTTCCTATCAGCCACGGACATCAGAGAAGCGTATCGGACAATAAAGATGAACTGGTCAGTGTAGAATCTCAATCGCCGGCGGCACAGTCCGCCCATGAAGCGAGTTTAGGCGCGAATGTTTCCCGAAGCGGGAGCAGCTGGTGGCTGAAGGAATACGCAGACAGGCTGTCATCTTCTATATCGTCCCGAACAGTATCCTTTAGAGGCTCTGGTAGGTTCTTTACTAGCGGCAATGCTAGCCACCAGAGCGACGCCGGCATCTCCGCCGAGGACTGCGACTTGGAAGCAATGAGATTAGGTGAAGAAATTAGCGAAACTTTTCGGTGGCTGTCAGTGGTATGA 1140 0.5211 MASPPPYTLNVVGSEPQSFTGTTSTSYYQASSQHSSSASHNINTSVLIILIVLAVTSTVWLSLYLLLRLLNLQCLRRPSLSYFSSSSRRNATPATATATTNATETATATAMPVFSSSRRFSLEIPSTSTIDSLPMFEFSSITRCSSACDTTVGGCAVCLSKFEQQDLLRLLPLCCHAFHVECIDTWLQSNLTCPLCRSAIFASDSELMKVLQSSLDDSGGSNSFRREIGNISHRGPVPPDEAGDLRARSRSYSVGSFEYFVDEDLEVPISHGHQRSVSDNKDELVSVESQSPAAQSAHEASLGANVSRSGSSWWLKEYADRLSSSISSRTVSFRGSGRFFTSGNASHQSDAGISAEDCDLEAMRLGEEISETFRWLSVV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01077 379 SMART ring_2 155 196 IPR001841 -
Accr6g01077 379 SUPERFAMILY RING/U-box 131 202 - -
Accr6g01077 379 CDD RING-H2_EL5-like 155 197 - -
Accr6g01077 379 MobiDBLite consensus disorder prediction 226 245 - -
Accr6g01077 379 MobiDBLite consensus disorder prediction 272 302 - -
Accr6g01077 379 Pfam Ring finger domain 155 197 IPR001841 -
Accr6g01077 379 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Accr6g01077 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 201 IPR013083 -
Accr6g01077 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 37 283 - -
Accr6g01077 379 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01077 Accr-Chr6 30470240 30471379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01077 128 202 C3H Transcription Factor Family AT2G18650 54.667 4.23e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01077 K10663 - qsa:O6P43_026856 334.724