Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01076 ATGGCTTCTCCACCACCTTACACCTTAAACGTAGTGGGATCAGAACCTGAATCCTTCACCGGAACGACTTCTACCTCTGATTATCAAGCTTCTTCACAACATTCCTCTTCGGTTTCTCACCGTATCAACACCAGCGTGCTCATTATTCTTATCGTCCTCGCCGTAACCTTCGTTGTGTGGCTCTCTCTCTACCTGCTCCTTCATCTCCTCAATCTCCGGTGCCTCCGACGGCCATCTCCGTCATCTTTTTCATCATCGTCCAGGAGGAATGCAACGCCTGCGACTGCGACAGCGACTATCATGCCTGTTTTCTCTTCCAGCCGTCGCGTCTCGCCAGAGATTCCCTCGGCTTCCATTATTGACTCGCTTCCGATGTTCGAGTTTTCTTCTATTACTCGTTCCTCTTCTGCCTCTGATACTACCGGTGGCGACTGTGCGGTCTGCCTCTCGAAATTTGAGCAGCGAGACCTCCTCCGTCTTCTGCCGCTGTGCTGTCACGCCTTCCATGTTGAATGCATTGACACATGGCTTCACTCCAATTTGACTTGTCCGCTGTGCCGATCTGCGATTTCTGCCTCTGATTCGGAGCAAATGAAGGTTCTCCAATCGTCGCTCGACGACAGTGGCGGCAGCAATAGTTTCCAGATAGAGATCGGGAACATCAGCCGCCGTGGACCGGCACCACCAGAAGTTGCCGGAGACCAGCCTGCGAGGTCGAGGTCTTATTCCGTTGGCTTATTTGAGTATATCGTTGACGAGGACTTCGAGGTTCCTATCAGCCACGCACATCAGAGAAGTGTATTGGACAATAAAGACGAACCGGTCACTGTAGAATCTCAATCGGCGGAGGCGGTGGTTCAGTCCGCCCATGAAGCGACTTTAGCCGCGGATGTTTCCCGAAGCGGGAGGAGCTGGTGGCTGAAGGAATACATAGACAGGCTGTCATATTCTATATCATCCCGAACTGTATCCTTTAGAGGCTCTGCTAGGTTTTTTACCAGCGGCAATCCTAGTCACCGGAGCAACGCCGGCATCTCCGCCGAGGACTGCGATTTGGAAGCAATGAGATTAGGCGAAGAAATTAGCGAAACTTTTCGATGGCTGTCAGGGGTATGA 1116 0.5197 MASPPPYTLNVVGSEPESFTGTTSTSDYQASSQHSSSVSHRINTSVLIILIVLAVTFVVWLSLYLLLHLLNLRCLRRPSPSSFSSSSRRNATPATATATIMPVFSSSRRVSPEIPSASIIDSLPMFEFSSITRSSSASDTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLHSNLTCPLCRSAISASDSEQMKVLQSSLDDSGGSNSFQIEIGNISRRGPAPPEVAGDQPARSRSYSVGLFEYIVDEDFEVPISHAHQRSVLDNKDEPVTVESQSAEAVVQSAHEATLAADVSRSGRSWWLKEYIDRLSYSISSRTVSFRGSARFFTSGNPSHRSNAGISAEDCDLEAMRLGEEISETFRWLSGV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01076 371 CDD RING-H2_EL5-like 144 187 - -
Accr6g01076 371 SMART ring_2 145 186 IPR001841 -
Accr6g01076 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 37 283 - -
Accr6g01076 371 MobiDBLite consensus disorder prediction 13 34 - -
Accr6g01076 371 FunFam E3 ubiquitin-protein ligase ATL6 105 193 - -
Accr6g01076 371 MobiDBLite consensus disorder prediction 1 34 - -
Accr6g01076 371 SUPERFAMILY RING/U-box 121 193 - -
Accr6g01076 371 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Accr6g01076 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 197 IPR013083 -
Accr6g01076 371 Pfam Ring finger domain 144 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01076 Accr-Chr6 30450389 30451504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01076 118 194 C3H Transcription Factor Family AT5G05810 50.649 1.20e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01076 K10663 - qsa:O6P43_026856 319.701