Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01065 ATGCTCGTCACGATTGCGTTTTCCTCTGTCTCCGCCTTGCGGTTCGCCACCAAAAGACCTTCCGAATGTGGTTCAAACAATTCTTTTCCCCTGAAGCTCAGAGCATCTCTCCACGACTATCCACTCGCAAGCAAAATTGTGGTAAAAAATTTACCATATTCTACTGGTGAGAATATTCTCAAGAAGGAATTTTCAAACTTTGGCGAGATAGCTGAAGTTAAAGTTGTTAAAGATGCCACAAAAAGATCTAAGGGATATGCCTTTATTCAGTACACTTGCCAAGATGATGCAATGCTTGCACTAGAAAACATGGATCAAAAGGTATTTGATGGGCGGAAAATATACGTAGAAGTTGCAAAACCTGGTAAGGATGCTTTTCGTGGCCACCCAAAGACCTCTGGGCCCCCAAAGAAGTGGCATAACTCTGTTCAAGAGGAAGTGGTGGATTGCTGGTACTGA 459 0.4314 MLVTIAFSSVSALRFATKRPSECGSNNSFPLKLRASLHDYPLASKIVVKNLPYSTGENILKKEFSNFGEIAEVKVVKDATKRSKGYAFIQYTCQDDAMLALENMDQKVFDGRKIYVEVAKPGKDAFRGHPKTSGPPKKWHNSVQEEVVDCWY 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01065 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 44 142 - -
Accr6g01065 152 Gene3D - 34 145 IPR012677 -
Accr6g01065 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Accr6g01065 152 SMART rrm1_1 45 117 IPR000504 GO:0003723
Accr6g01065 152 CDD RRM_SF 46 117 - -
Accr6g01065 152 SUPERFAMILY RNA-binding domain, RBD 44 131 IPR035979 GO:0003676
Accr6g01065 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01065 43 124 Eukaryotic Initiation Factors Gene Family AT4G34110 31.707 6.98e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01065 - - qsa:O6P43_013392 189.889