Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01062 ATGGTTTCTCCAAACGCCTTTCACAATGATGGCCTTTCAAACTACCCTTACAATGGAGACCTAAATACCGCCAACTCCTACTCCTCCAACAACCCCAGCCACTCACTTCTTCCTCCGCCGCAAAAACCATTTCACCACCACTATAATGGATCCTCCTTAGCCAACACCCATTTCAACAATTTCCCTTCCCTCCTACGCCCCGACTCCACTGTCAATAATCAATCCATAGCCATACCCTACGCCGATGTACCAGAACAAGAATGGCTCTCAGAATTTTTGTACAGTTCCTTCAATGACAACTTCTCGGGGACAAGTGAGACGACAGCGCTGGAGGGTTTCTCTGTTGCACAATCTGACGCGTTGTTTACTAGCAAAGCTGATCAAAAGGGTTCGAGAGCATCCAGTGGAAAATCGAGACCTAAAACAGAGTCAAAAGGTGGGTCATCGTCTTCGTCAGAAAAGGGATCAGGTACTCGTAGGTGCACCCACTGTGCAGCAGATGATACCCCGCAATGGCGGAGTGGACCCCTGGGACCCAAGACACTGTGCAATGCTTGCGGTGTTAGGTACAAGTCTGGTCGGCTTGTACCCGAATACCGACCAGCATCAAGTCCTACGTTTGAGTTCAGTCAGCACTCGAACTCACACCGGAAGGTGCTGGAACTCCGGAGACAGAAGGAGCTGATGATAAAGCAGGAAATGCCTTCGAACTCGCACCGGAAGGTGCTGGAACTCCGGAGACAGGAGGAGCTGATGATAAAGCAGGAAATGCCTTTTAAATTATAG 786 0.4962 MVSPNAFHNDGLSNYPYNGDLNTANSYSSNNPSHSLLPPPQKPFHHHYNGSSLANTHFNNFPSLLRPDSTVNNQSIAIPYADVPEQEWLSEFLYSSFNDNFSGTSETTALEGFSVAQSDALFTSKADQKGSRASSGKSRPKTESKGGSSSSSEKGSGTRRCTHCAADDTPQWRSGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFEFSQHSNSHRKVLELRRQKELMIKQEMPSNSHRKVLELRRQEELMIKQEMPFKL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01062 261 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Accr6g01062 261 SMART GATA_3 155 205 IPR000679 GO:0006355|GO:0043565
Accr6g01062 261 FunFam GATA transcription factor 151 235 - -
Accr6g01062 261 PANTHER GATA TRANSCRIPTION FACTOR 31 230 - -
Accr6g01062 261 CDD ZnF_GATA 160 207 IPR000679 GO:0006355|GO:0043565
Accr6g01062 261 MobiDBLite consensus disorder prediction 23 46 - -
Accr6g01062 261 MobiDBLite consensus disorder prediction 124 173 - -
Accr6g01062 261 Gene3D - 151 242 IPR013088 GO:0006355|GO:0008270
Accr6g01062 261 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Accr6g01062 261 ProSiteProfiles GATA-type zinc finger domain profile. 155 191 IPR000679 GO:0006355|GO:0043565
Accr6g01062 261 MobiDBLite consensus disorder prediction 140 158 - -
Accr6g01062 261 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01062 Accr-Chr6 29492203 29493210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01062 37 229 C2C2-Gata Transcription Factor Family AT2G45050 45.815 3.77e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr6g01062 GATA 2.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01062 - - pcin:129288162 222.631