Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01044 ATGGCTCTTTTCACTCTTCAGTTTCCATTAACCTCTCAATTCTTCAATCCTCTTGTGGCTTGGTTTTCATTCTTGCTCATAGTGAGCGCTTCCTCTTGTTCCAATAACCCTAGAAAGTTTCTTAATTCTTCTTCATCCTATACTAGTGATTCCGATTGGTCTCCGGCAGATGCTACATGGTACGGAAGCACTAACGGCGATGGAAGTGAAGGTGGTGCTTGTGGATATGGCAGTACTGTAGGACAACCTCCATTTTCTTCGATGATATCAGCAGGCGGCTCACCTATATATAATTCAGGCAAAGGCTGTGGGGATTGTTATGAGGTGAAGTGCACGTCGAATAAAGCATGTTCTGGTAACCCAGTGACCGTTGTGATCACTGATGAGTGTCCTGGGTGTGGTTCTGCTCAGAGATTTCACTTTGATTTGAGTGGCACTGCTTTTGGGGCCATGGCTGTTTCTGGTCAAGCAGATCAACTACGCAATGCTGGGAAGTTGGAGATTCAATATAGAAGTATCAAATGTAACTTCCCATCAGGGACAACTATAGCATTCAAAGTGGACTCAGGATCAAACCCATATTATTTTGCCGTTGTGATAGAATATGAGAATGGACATGGCCTTGCCAACGTTGAACTCAAGGAAGCTCAGGATTCAGCTTCATGGCGTCCCATGCAACAATCCTGGGGTGCTGTTTGGAAGCTTAACTCTGGCTCACCACTTCAGCCACCATTCTCCCTCCGGCTAACTGCACCGGAGTCGCTGGACTATCAGAAAACCATGGAGGCAAGCAATGTGATCCCAGCAGGATGGACTCCTGGTCAGACTTATGGATCTCTGGTCAACTTCAACTAA 855 0.4608 MALFTLQFPLTSQFFNPLVAWFSFLLIVSASSCSNNPRKFLNSSSSYTSDSDWSPADATWYGSTNGDGSEGGACGYGSTVGQPPFSSMISAGGSPIYNSGKGCGDCYEVKCTSNKACSGNPVTVVITDECPGCGSAQRFHFDLSGTAFGAMAVSGQADQLRNAGKLEIQYRSIKCNFPSGTTIAFKVDSGSNPYYFAVVIEYENGHGLANVELKEAQDSASWRPMQQSWGAVWKLNSGSPLQPPFSLRLTAPESLDYQKTMEASNVIPAGWTPGQTYGSLVNFN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01044 284 Pfam Lytic transglycolase 90 170 IPR009009 -
Accr6g01044 284 SUPERFAMILY Barwin-like endoglucanases 45 179 IPR036908 -
Accr6g01044 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 279 IPR007117 -
Accr6g01044 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 180 IPR007112 -
Accr6g01044 284 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Accr6g01044 284 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Accr6g01044 284 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Accr6g01044 284 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Accr6g01044 284 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Accr6g01044 284 CDD DPBB_EXPB_N 55 175 - -
Accr6g01044 284 SMART dpbb_1 89 170 IPR007112 -
Accr6g01044 284 Pfam Expansin C-terminal domain 183 268 IPR007117 -
Accr6g01044 284 PRINTS Major pollen allergen Lol pI signature 111 121 IPR005795 GO:0005576|GO:0019953
Accr6g01044 284 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Accr6g01044 284 PRINTS Major pollen allergen Lol pI signature 91 102 IPR005795 GO:0005576|GO:0019953
Accr6g01044 284 PRINTS Major pollen allergen Lol pI signature 152 167 IPR005795 GO:0005576|GO:0019953
Accr6g01044 284 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576|GO:0019953
Accr6g01044 284 Gene3D - 177 284 IPR036749 -
Accr6g01044 284 SUPERFAMILY PHL pollen allergen 181 279 IPR036749 -
Accr6g01044 284 Gene3D - 37 176 IPR036908 -
Accr6g01044 284 PANTHER EXPANSIN-B3 29 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01044 Accr-Chr6 28933717 28936896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01044 37 283 Expansin Gene Family AT1G65680 61.694 3.38e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01044 - - pcin:129295689 377.096