Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01043 ATGGCTCCTTTCATTCTTGGAGGTTTCTTCTTGCTCTTCCTTATAATAGCGAGTCTTTCTTCCTCATTGTTCAACCCTAGAATCTTTCTCAATTCTTTATACCCCACTGATTCAGAGTGGTCTTCAGCAGATGCTACGTGGTATGGAAGCCCTGAGGGAGCTGGAAGTGACGGAGGTGCTTGTGGATATGGCAGTGATGTAGAAAAAACCCCTTTTTCTTCAATGATAGCAGCTGGAGGCCCACCAATTTATAACTCAGGATATGGGTGTGGATCTTGTTATCAGGTGATGTGCACATCTAATCCAGCATGTTCAGGTAGTCCAGTGAGCATAGTTATAACTGATGAATGTGTTGGGTGTGGCTCTACTCAAAGATTTCATTTTGATTTGAGTGGCACAGCTTTTGGTGCTATGGCTATTTCTGGCCAAGCTGATCTGTTACGCAATGTTGGCAAGCTAGAGATTCAATATAAAAGAATTCAATGTAATTATGGAGGAAAACCAATAGCATTTAAAGTGGACGCAGGATCGAATCCATATTATTTCGCTGTGTTGATAGAATATGAGAATGGAGATGGCGATCTTTCAATTGTTGAACTAAAACAAGCTAACTCTGAACAATGGCAAGCCATGCAATTAAATTCAGGTGCAACATGGAAGCTTAACGCTGCCATACCACTTCAAGCCCCGTTCTCCATTAGGCTAACCACTTTCGAGTCAAAGAAAACACTTGAAGCCATCAACGTGATTCAAGCAGGGTGGAGTCCAGGTCAAATTTATCAATCTTCTGTGAACTTCTAA 801 0.417 MAPFILGGFFLLFLIIASLSSSLFNPRIFLNSLYPTDSEWSSADATWYGSPEGAGSDGGACGYGSDVEKTPFSSMIAAGGPPIYNSGYGCGSCYQVMCTSNPACSGSPVSIVITDECVGCGSTQRFHFDLSGTAFGAMAISGQADLLRNVGKLEIQYKRIQCNYGGKPIAFKVDAGSNPYYFAVLIEYENGDGDLSIVELKQANSEQWQAMQLNSGATWKLNAAIPLQAPFSIRLTTFESKKTLEAINVIQAGWSPGQIYQSSVNF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01043 266 Gene3D - 164 266 IPR036749 -
Accr6g01043 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Accr6g01043 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Accr6g01043 266 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Accr6g01043 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Accr6g01043 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Accr6g01043 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Accr6g01043 266 SUPERFAMILY PHL pollen allergen 167 262 IPR036749 -
Accr6g01043 266 Pfam Lytic transglycolase 77 156 IPR009009 -
Accr6g01043 266 CDD DPBB_EXPB_N 40 162 - -
Accr6g01043 266 PANTHER EXPANSIN-B3 23 266 - -
Accr6g01043 266 Pfam Expansin C-terminal domain 169 250 IPR007117 -
Accr6g01043 266 SUPERFAMILY Barwin-like endoglucanases 30 166 IPR036908 -
Accr6g01043 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 262 IPR007117 -
Accr6g01043 266 Gene3D - 30 163 IPR036908 -
Accr6g01043 266 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Accr6g01043 266 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
Accr6g01043 266 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Accr6g01043 266 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Accr6g01043 266 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Accr6g01043 266 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Accr6g01043 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 167 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01043 Accr-Chr6 28822858 28825655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01043 24 266 Expansin Gene Family AT1G65680 57.959 1.89e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01043 - - pcin:129295689 329.331