Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01040 ATGGAGAAGCACAAGTGCAAGCTCTGCTTTAGAAACTTCTCTAATGGCAGAGCTTTGGGAGGTCACATGAGATCTCACATGGTCAACCTTCCTGTTCCTCCAAAACCAGAACCACCATTAGCCCAACTCAGCTTCGAGGCCGACTCTTCTCCGTCGTCTTCATCATCGTCTTCCTCAGACGAAGAAGAAGATGATGATAAAGCTCTCTGTTATGGCCTCCGAGAGAACCCCAAGCGAAGCTTTCGCCTTGTGGATCCTCACTTTTCCTTCCCCGTAGAAGCCGCCTCTGTAATTCTTCAAGACAGAGAAAGCGAAACTGAATCGTCCAAGAATCCAACTCGAAGAAGATCCAAAGGGGAATTTAATAATGATAACCAGTTCCACCATCTTCAGAAGAAGATGAAACCCAGTAATGATCATCACCATCATAAGAATAAGAACGAGTCATCTTCCTGGGTTGAGCCTGAACCGGTTAGTTCGATCTCCGATGCGACCACAGAGGAGGATGTCGCATTTTGTCTTATGATGTTGTCCAGGGACGAATGGAAGAGACAAGAGGAAAAAGACGAAGAAGAAGAAGAAGACGATGAAGAAGAGGACGAAGAAGAAGAGGAAGAAGAAGAAGAGGACGAGGAGGAGGAAGACGATGACGGAGAGAGATCTGTGGAAGATTCTGATGAATTCTACGAGGGGATGAAATCATCGAAAGCAAGATCAGTTCGTGGAAGGTACAAATGTGAGACGTGTAAGAAAGTGTTTAGATCATATCAAGCATTGGGAGGTCACAGAGCGAGTCACAAGAAAATCAGAGCGGTTGCCATATGTGACACAGATAATAATTCTCCGGCCACGGCGGCGGCGGCAGAGAAGAAAATCCATGAATGTCCAGTTTGTTTCAGAGTGTTTGCTTCAGGTCAAGCTCTTGGGGGCCACAAGCGAACACACGTAACTGGTTCAGCAACTTCGGTTGTTCAAAGTACTCCATCAACAACAACAACCAAGTTTGGAGATAACAACAAAAATATCAACAGTTTGATAGATCTTAACCTTCCGGCTCCAGTTGATGAAGAAGATGAGACCAGCCAAATTGAAAATTCTGCAGTTTCAGATTCAGGATTCTTCAAACCCAGTTCACAGATCATTGAGGCACAAGTATAG 1158 0.4508 MEKHKCKLCFRNFSNGRALGGHMRSHMVNLPVPPKPEPPLAQLSFEADSSPSSSSSSSSDEEEDDDKALCYGLRENPKRSFRLVDPHFSFPVEAASVILQDRESETESSKNPTRRRSKGEFNNDNQFHHLQKKMKPSNDHHHHKNKNESSSWVEPEPVSSISDATTEEDVAFCLMMLSRDEWKRQEEKDEEEEEDDEEEDEEEEEEEEEDEEEEDDDGERSVEDSDEFYEGMKSSKARSVRGRYKCETCKKVFRSYQALGGHRASHKKIRAVAICDTDNNSPATAAAAEKKIHECPVCFRVFASGQALGGHKRTHVTGSATSVVQSTPSTTTTKFGDNNKNINSLIDLNLPAPVDEEDETSQIENSAVSDSGFFKPSSQIIEAQV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01040 385 Gene3D Classic Zinc Finger 241 315 - -
Accr6g01040 385 Coils Coil 179 217 - -
Accr6g01040 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 320 IPR013087 -
Accr6g01040 385 MobiDBLite consensus disorder prediction 103 133 - -
Accr6g01040 385 ProSitePatterns Zinc finger C2H2 type domain signature. 295 315 IPR013087 -
Accr6g01040 385 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Accr6g01040 385 MobiDBLite consensus disorder prediction 151 166 - -
Accr6g01040 385 MobiDBLite consensus disorder prediction 101 166 - -
Accr6g01040 385 MobiDBLite consensus disorder prediction 187 224 - -
Accr6g01040 385 MobiDBLite consensus disorder prediction 182 234 - -
Accr6g01040 385 MobiDBLite consensus disorder prediction 28 67 - -
Accr6g01040 385 SMART c2h2final6 293 315 IPR013087 -
Accr6g01040 385 SMART c2h2final6 4 26 IPR013087 -
Accr6g01040 385 SMART c2h2final6 244 266 IPR013087 -
Accr6g01040 385 SUPERFAMILY beta-beta-alpha zinc fingers 243 315 IPR036236 -
Accr6g01040 385 Pfam C2H2-type zinc finger 4 27 - -
Accr6g01040 385 Pfam C2H2-type zinc finger 243 268 - -
Accr6g01040 385 Pfam C2H2-type zinc finger 293 315 - -
Accr6g01040 385 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 375 IPR044303 GO:0006355
Accr6g01040 385 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Accr6g01040 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Accr6g01040 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01040 Accr-Chr6 28703720 28704877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01040 1 363 C2H2 Transcription Factor Family AT3G60580 42.005 4.53e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr6g01040 zf-C2H2_6 9.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01040 - - qsa:O6P43_027017 380.563