Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00930 ATGGCGGACACAACCTCTCCCATGCTCATTGATGACGATGATAACATCTTCTCTGCCATGCCCGACAAGGGCAAAAGCGTGGTCGTTGCCGGCAATCCATCCGATAGCAAGGATATACCGTGGGTTGAAAAGTACCGCCCTAAATCTCTTGATGACGTCGCTGCGCATCGTGACATTGTCGATACCATTGACAGGCTGACCTCTGAGAACAGATTACCCCATCTTCTACTGTATGGTCCTCCAGGCACGGGCAAAACATCAACAATTCTCGCTGTGGCCCAAAAACTATATGGAGCACAATACCGTAAGATGATTTTGGAGCTCAATGCATCAGATGACAGGGGGATTGATATTGTACGCGATCAGATACAAAATTTTGCTAGCACCCAGAGCTTCTCATTTGGAGTCAAGTCCTCTGTAAAGTTGGTCCTGTTAGATGAGGCAGATGCAATGACAAAGGATGCACAATTTGCATTGCGTAGAGTGATTGAGAAATATACAAAAAGTACTCGGTTTGCACTTATCTGTAACCATGTAAACAAGATTATCCCAGCACTGCAATCAAGATGCACTCGATTTCGGTTTGCCCCACTTGATGCTGTTCATATTACTGAGAGATTGAAGCATATTATTAAGGCTGAAGGGCTTGATGTTACAGAAAGCGGCTTAGCAGCACTTGTTCGGCTGTGTAATGGAGATATGAGAAAGGCTTTGAACATTTTGCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTATCTTTGTACTGGAAACCCATTACCCAAAGACATTGAGCAAATATCTTACTGGCTTCTGAATGAACAATTTGCAGATAGTTTTAAAAGAATATATGAAATCATGACAAGAAAAGGATTGGCTGTGGTGGATATTGTGAGAGAAGTCACAATGTTTGTTTTTAAGATTAAGATGCCTCCAAGCGTTCGAGTACAGTTGATGAATGATTTGGCTGACATAGAGTACAGATTGAGTTTTGGGTGCAATGATAAGCTGCAGCTGGGATCGGTTATTGCTTCTTTCGCACGTGCTAGATCTGCACTGGTTACGGCCGCTAGTTAA 1089 0.4316 MADTTSPMLIDDDDNIFSAMPDKGKSVVVAGNPSDSKDIPWVEKYRPKSLDDVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVAQKLYGAQYRKMILELNASDDRGIDIVRDQIQNFASTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHITERLKHIIKAEGLDVTESGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIMTRKGLAVVDIVREVTMFVFKIKMPPSVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFARARSALVTAAS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00930 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 40 344 - -
Accr6g00930 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 256 IPR027417 -
Accr6g00930 362 Gene3D - 33 197 IPR027417 -
Accr6g00930 362 Pfam ATPase family associated with various cellular activities (AAA) 75 195 IPR003959 GO:0005524|GO:0016887
Accr6g00930 362 FunFam Replication factor C subunit 5 200 262 - -
Accr6g00930 362 Pfam Replication factor C C-terminal domain 263 349 IPR013748 -
Accr6g00930 362 CDD AAA 59 197 - -
Accr6g00930 362 CDD HLD_clamp_RFC 198 260 - -
Accr6g00930 362 Gene3D - 263 360 - -
Accr6g00930 362 SMART AAA_5 71 201 IPR003593 GO:0016887
Accr6g00930 362 FunFam Replication factor C subunit 5 33 198 - -
Accr6g00930 362 Gene3D - 201 262 - -
Accr6g00930 362 FunFam Replication factor C subunit 5 263 360 - -
Accr6g00930 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 353 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00930 Accr-Chr6 20390532 20395394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00930 1 361 Core DNA Replication Machinery Family AT1G77470 76.423 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00930 K10756 - gmx:100805231 623.624