LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr6g00883	ATGGCTGCGTCTTCTTCTTCTTCCCAGGTCCCATGTGGAAAATATGATGTTTTCATCAGCTTCAGGGGTCCAGATGTCAGATTTGGTTTTGTGCACCATTTGAAAACGGCGTTGAGTCAAAAGCTCATAGATGTCTATGTGGATGACAGGCTCGAGGGAGGAGACGAAATATCACCAACACTTATGAAAGCAATAGAAAGATCCAAGATTGCGTTGGTTATATTCTCAAAAGATTATGCTTCCTCAAGGTGGTGTTTGGAAGAGCTTGTCAAAATCATGGAATGTAAGGAAGCTGGTAAACAGATTGTGATACCAGTTTTCTATCTCGTAGATCCATCAGACGTCAGGCATCAAAATCACACTTATGCAAAGGCATTCACTCGTCATAAAGAGAAGTTCAAGGTGAGCGAGGACAATTTACGAAATTGGAGATCCGTCTTAAAACAATCTGCCAACTTATCTGGTCATCCTTCATCTGCATTTCCAAATGAATCCGAACTCATTGTTGCAATAGTCGAAGATGTCTTGAAAAAGCTAAAAGAGAAGAAGCCCATTGTCCCAAATCCTGACCTCTTTGTCCCAAATTCTCAGATCATCATTGGATCTCATCAAAATGTTACGATTATTGAATCATTAATGGAAATTAAGTCACAGGAAGTTCGATTTGTTGGGATATGGGGCATGGGAGGGATAGGCAAAACAACCCTTGCTCGTGCTATATTTGGCAAATTCTGTTCTGAATTTGCTAGGTACTACTTCTTAGAAAATGTGAGAGAAAAATCAAAGGTTAATAATGGTTTTAATTCTTTACGTAAGGAGCTTCTTTCTAAGCTAGGCCAAAACGATCACAAGAATAACACACCGGAAAAAGTCTTAATTGCCCTTGATGACGTGGACAATCCAAAGCACCTAAAAGATTTGGTTGGACTTCTCCAATTTGGACCAGGCAGCAGGGTCATTGTAACAAGTAGGAAGAAGGATGTTCTTAGGAGTGGAGGGATTAATGATCAATTCATACATGGAGTTGATGAATTGAGTTCAGAAGAATCACTTGAACTCTTTAGTATACATGCCTTCAATCAGAGTCGGCCTAAAGAGGAATATGAAAAGCTATCACAAAAGACATTGGACATTGCTAAAGGAGTTCCTTTAGCTTTAGAAGTTTTGGGTTCCCATTTTCATTCTAGAGATAAAGCATATTGGGAAAGTGAGCTTATCAAACTCAAGAGGTATCCCCATGAGGAAATTCAAAATATATTGAGGATAAGTTATGATGGATTGGATTGTGTGGATAAGGAAATGTTTTTAGACATTGCTTTTTTTTTAGTGGGTTGCTACAAGGATATGGTTACTTCTCTGCTAGAGGCTTGTGGTTTCAAAGCGGTTAGTGGAATACAAAATCTTATAGATAAAGCTCTCATAAAGTCAAAGGGGTTTGGCCGTATTTTAATGCATGATTTGATACGAGAAATGGCTGAGCAAATAGTTCGTGAAGAAAGTATGAGACATCCTCAAAGACGTAGCCGATTAAAAGATGCAGATGACATTTATAATATATTGAAAAGTAATGAGGGAACGGATGAAATTGAATGCATTGGATTGGATATGGATCTAATAGACAAATATATAAAAGTGGAAGCTGACATTTTTGGAAAGATGAAAAAATTAAGATTACTCTTTTTATTGAGGTATGCCCGTGAGCCAAATATAGATTTTCCTTCTGATCTTCACCCATTTTCTAATGAATTGAGGTTTCTATGGTGGGATTCTTATCCATTGGAGACCCTGCCATCAGGCTCTTATCTTGAAAACCTTGTTGTGATTCACATGGAAAGAAGCAATGTTAAAAGGCTTTGGGATGGAAAACAGGATCTTGGAAACCTAAAGACAATAAATTTTAGCTGTTCCTATCAATTGATAGAGTTGCCTGATCTCTCAATGGCACACAAGCTTGAAAGTGTAGAGCTCCAATGCTGTATAAGTTTGAGGAGTATTCATCCATCTATTTTATCTCTCCCCAGTATTATTAAACTGGAAGTATCTAATTGCTCAAAATTAGAGAGTATTGAAAGTGAGACTCATTTAGAATCTTTCTTTGACCTTAGGGCTAATGATTGTTGCCTCAAGAAATTAAGTTTTTCATCAAAAAAATTGAGAGTGTTAAATCTAGGTAACACTAAAGTTGAAATGTTGCATTTTCCAATCAATCGTTGCACAGAACTTACATGTATTGCAATTGAAGATGGTAGAGTTGGGAGTGTTTCAATAGATGAGCTGTGTTGCTTGACAAATCTTGAGGTGTTTGCGGTTACCAATTTGAAGAAAGTAATTGACATAAAGCAGCTACACTCCCTTTTTGATGCTTGGCGTAATTTAGGAGAACTACGTTTGGAGGGGAGTTTCTTGTCGGAAATCCCCGACAATATCAAGGCCTTGACAAGCTTGACATACATTTCCCTGAGAAGTTGCAAAAGGCTTAAGTCTATTCTTGGACTTCCTCCCTTCCTTCAACACTTAGACGCCTCTGAATGCGCATCATTGGAGACTGTATCCTCTGACTCTCTGGTTCGGAATAAATGTGTCTTCAACTTCTGTAACTGTGAAAAGTTGGATGAGCGTTCACTTCGCTATATTCGGGAATTAATTCTTTCCTCAATGACTTCAGCCAGTGGTAGTTATGATGATGATGAAATAACTTGTTACCCAGGAAGTAGAGTTCCAGAGTGGATGGAATATAAACCTATGATAGAGGCTTTCAATGCAACCGAATTTACTTGCAATCTTGAACGATCACATGATTTATTAATTTGCTGTGTTGCTCCTCCTCATCCCATTTCACATCATTTAAAAGAAGTGCATTGTTATTTCTCTTATGATGATAACAAGAAATTCCATACTTCACACGCGTTATCTTATCCTACATTGTATTGGGATCATGTGTTGCTATGGCGTGTGATGATGTGGTTCTCATCTGGGATAGATAATGATGCTAAGATTGCATGTGAATTATTTCTGGAATATTGGGATGAAGTGGAGAGAGCCTCTTACAAAGTCCCTGCAAAAGCATGTGGAGTACACCTACTCCATTGCTTGGAGCCGGGTCGAAGTAGAAAGAGGGTTGCAGATATTAGGGTTGAAAATCAACTCCCTTGCACAAAGCAACTCAAGACTTTTGGTGTCTCTCATGTTGATAACTTCATCTGTCACCCCTTGCAACTCAAATTTCTACGCATTAGCAAACAAAAGGACCTCTCTCTAATACACTTCCTTTAA	3273	0.3828	MAASSSSSQVPCGKYDVFISFRGPDVRFGFVHHLKTALSQKLIDVYVDDRLEGGDEISPTLMKAIERSKIALVIFSKDYASSRWCLEELVKIMECKEAGKQIVIPVFYLVDPSDVRHQNHTYAKAFTRHKEKFKVSEDNLRNWRSVLKQSANLSGHPSSAFPNESELIVAIVEDVLKKLKEKKPIVPNPDLFVPNSQIIIGSHQNVTIIESLMEIKSQEVRFVGIWGMGGIGKTTLARAIFGKFCSEFARYYFLENVREKSKVNNGFNSLRKELLSKLGQNDHKNNTPEKVLIALDDVDNPKHLKDLVGLLQFGPGSRVIVTSRKKDVLRSGGINDQFIHGVDELSSEESLELFSIHAFNQSRPKEEYEKLSQKTLDIAKGVPLALEVLGSHFHSRDKAYWESELIKLKRYPHEEIQNILRISYDGLDCVDKEMFLDIAFFLVGCYKDMVTSLLEACGFKAVSGIQNLIDKALIKSKGFGRILMHDLIREMAEQIVREESMRHPQRRSRLKDADDIYNILKSNEGTDEIECIGLDMDLIDKYIKVEADIFGKMKKLRLLFLLRYAREPNIDFPSDLHPFSNELRFLWWDSYPLETLPSGSYLENLVVIHMERSNVKRLWDGKQDLGNLKTINFSCSYQLIELPDLSMAHKLESVELQCCISLRSIHPSILSLPSIIKLEVSNCSKLESIESETHLESFFDLRANDCCLKKLSFSSKKLRVLNLGNTKVEMLHFPINRCTELTCIAIEDGRVGSVSIDELCCLTNLEVFAVTNLKKVIDIKQLHSLFDAWRNLGELRLEGSFLSEIPDNIKALTSLTYISLRSCKRLKSILGLPPFLQHLDASECASLETVSSDSLVRNKCVFNFCNCEKLDERSLRYIRELILSSMTSASGSYDDDEITCYPGSRVPEWMEYKPMIEAFNATEFTCNLERSHDLLICCVAPPHPISHHLKEVHCYFSYDDNKKFHTSHALSYPTLYWDHVLLWRVMMWFSSGIDNDAKIACELFLEYWDEVERASYKVPAKACGVHLLHCLEPGRSRKRVADIRVENQLPCTKQLKTFGVSHVDNFICHPLQLKFLRISKQKDLSLIHFL	1090

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr6g00883	1090	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	181	-	-
	Accr6g00883	1090	SUPERFAMILY	"Winged helix" DNA-binding domain	415	518	IPR036390	-
	Accr6g00883	1090	PRINTS	Disease resistance protein signature	222	237	-	-
	Accr6g00883	1090	PRINTS	Disease resistance protein signature	670	686	-	-
	Accr6g00883	1090	PRINTS	Disease resistance protein signature	379	393	-	-
	Accr6g00883	1090	PRINTS	Disease resistance protein signature	285	299	-	-
	Accr6g00883	1090	Pfam	TIR domain	14	184	IPR000157	GO:0007165
	Accr6g00883	1090	Gene3D	Ribonuclease Inhibitor	536	712	IPR032675	-
	Accr6g00883	1090	Pfam	NB-ARC domain	208	414	IPR002182	GO:0043531
	Accr6g00883	1090	SMART	till_3	14	153	IPR000157	GO:0007165
	Accr6g00883	1090	Gene3D	-	12	185	IPR035897	-
	Accr6g00883	1090	ProSiteProfiles	TIR domain profile.	13	179	IPR000157	GO:0007165
	Accr6g00883	1090	SUPERFAMILY	L domain-like	550	872	-	-
	Accr6g00883	1090	Gene3D	Ribonuclease Inhibitor	713	895	IPR032675	-
	Accr6g00883	1090	Gene3D	-	344	428	IPR042197	-
	Accr6g00883	1090	Gene3D	-	189	335	IPR027417	-
	Accr6g00883	1090	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	438	IPR027417	-
	Accr6g00883	1090	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	725	IPR044974	GO:0006952
	Accr6g00883	1090	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	155	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr6g00883	Accr-Chr6	18827956	18831603	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr6g00883	15	833	WRKY Transcription Factor Family	AT4G12020	29.787	1.33e-74	269

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr6g00883	-		-	pcin:129311144	737.258