Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00880 ATGGTGGAGCAACGCGGAGAAGTCGATGATAACTATTCCATAGAAGACTGGTTCTTGCGAGCTCAAGAACTTGTACCTATTGCAATTAACAAGGCAAAAGAAGAGGTAAAGGGCTTTTCTGGTAGGTGGAAAGTGATTGTTTCAAAGATAGAACAGATCCCAACATGCTTATCAGACTTGTCTAGCCATCCTTGCTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGGCCGTGTCAAAGACACTCGAGGAAGCAATCCATTTGGCCGAGTTATGCGCAAAGGAGAGTTATGAAGGTAAGCTTCGAATGCAGAGTGATCTCGATGCTTTATCCGGGAAGTTGGATTTGAATTTACGAGATTGTCGGCTTTTGATCAAGACCGGTGTCCTCGGCGAGTCTACTTTTCCATTGGGTATGTCTAATGATATGAAACAAGGGAATGATTTGAGAGAATTATTTGCACGCCTTCAGGTTGGTGACTTAGAGGCCAAGCACAGAGCTATAGATAGTCTTATTGAAGCAATGAAGGAAGAAGAAAAGAGTGTTATGGCTGTTGTAGGAAGAAGTCAAATTGCTTCTTTAGTTCAATTGTTAACGGCTACTTGCACTAGGATGAGGGAAAAAGCGGTTACTGTCATATGTTGTCTTGCAGAATCTGAAAACTGCGAGAATTGGCTTCTCTCTGAGGGAGTTTTGCCATCTCTGATTCGGCTTATCGAATCTGGCAGTGCTATTGGGAGAGAGAAGGCTGCGATATGTCTTCAGAGGCTGTCTATGTCAGAGGAATCGGCCCAAGAAATTGTCGAACACGGCGGGGTTAGGCCAATGATTGAGCTATGTCATAATGGGGATTCTGTGTCCCAATCTGTTGCTGCTTGTTCTTTGAAGAACATATCTGTTGTTCCTGAATTGAGACTAGCTTTGGCTCAAGAAGGAATTGTGACGACCATGATCAATCTCCTTGATCATGGAATCGTTCCGGGATCCAAGGAATCTGCTTCAGAGTGCTTACAGAATCTCACATCAAGCAATGAGAATCTAAGAAGGTCTGTCATATCAGAAGGTGGTGCTAAAAGCCTTCTTGCTTATCTTGATTCTCCACTCCCTCAAGAATCAGCTGTCACAGCATTGAGGAATCTAGTTGGATCAATTGGCGAGCAGGATTTGATCTCACTAGGCCTCCTTCCTCGTTTAATGCATGTGCTGAATTCGGGATCTCCCGGAGCTCAGCAGGCTGCTGTGTCAGTGATATGCCGGGTTTTGACCTCGTTGGATATGAAGAAAATGGTGGCCGAGGCCGGAGTCATCCCACCACTCATCAAAATGCTAGAAGCTAAACCGAACGCCATGAGGGAATTGGCGGCGCAAGCCGTTGCAAGCTTGATGACGGTAACACAAAACCGGAGGGAGGTGAGGAGGAATGATATGAGTGTGCCAAATTTGGTTCAGTTGCTTGATCCAAGCCCACAAAATACTGCAAAGAAATATGCAATTTCCTGTTTATGTTCACTTTCTTCAAGCAGGAAATGTAAGAAGCTGATGATTGCTTATGGGGCTATTGGATATCTAAAGAAGCTTAAAGAGATGGACATTCCAGGAGCTAAAATGCTTCTTGATAGATTGGAAAGAGGGAAATTGAGATGCTTATTTACCAGAAAATGA 1665 0.4408 MVEQRGEVDDNYSIEDWFLRAQELVPIAINKAKEEVKGFSGRWKVIVSKIEQIPTCLSDLSSHPCFSKNALCKEQLQAVSKTLEEAIHLAELCAKESYEGKLRMQSDLDALSGKLDLNLRDCRLLIKTGVLGESTFPLGMSNDMKQGNDLRELFARLQVGDLEAKHRAIDSLIEAMKEEEKSVMAVVGRSQIASLVQLLTATCTRMREKAVTVICCLAESENCENWLLSEGVLPSLIRLIESGSAIGREKAAICLQRLSMSEESAQEIVEHGGVRPMIELCHNGDSVSQSVAACSLKNISVVPELRLALAQEGIVTTMINLLDHGIVPGSKESASECLQNLTSSNENLRRSVISEGGAKSLLAYLDSPLPQESAVTALRNLVGSIGEQDLISLGLLPRLMHVLNSGSPGAQQAAVSVICRVLTSLDMKKMVAEAGVIPPLIKMLEAKPNAMRELAAQAVASLMTVTQNRREVRRNDMSVPNLVQLLDPSPQNTAKKYAISCLCSLSSSRKCKKLMIAYGAIGYLKKLKEMDIPGAKMLLDRLERGKLRCLFTRK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00880 554 Coils Coil 162 182 - -
Accr6g00880 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 551 - -
Accr6g00880 554 SMART arm_5 302 343 IPR000225 GO:0005515
Accr6g00880 554 SMART arm_5 384 423 IPR000225 GO:0005515
Accr6g00880 554 SMART arm_5 344 383 IPR000225 GO:0005515
Accr6g00880 554 SMART arm_5 261 301 IPR000225 GO:0005515
Accr6g00880 554 SMART arm_5 424 464 IPR000225 GO:0005515
Accr6g00880 554 SMART arm_5 465 507 IPR000225 GO:0005515
Accr6g00880 554 SMART arm_5 178 219 IPR000225 GO:0005515
Accr6g00880 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 273 IPR000225 GO:0005515
Accr6g00880 554 SUPERFAMILY ARM repeat 191 527 IPR016024 -
Accr6g00880 554 Gene3D - 148 538 IPR011989 -
Accr6g00880 554 Pfam Armadillo/beta-catenin-like repeat 262 300 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00880 Accr-Chr6 18446024 18447688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00880 394 532 U-box Gene Family AT3G54790 28.058 1.12e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00880 - - gmx:100789140 787.719