Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00842 ATGCGCCACAACCTTGCAGGGCTGTGGATCTCTCTGCTCGCGATCTTCACCACCGCAGTTCATTGCAGGACTGACTCCCAGGATGTTTCAGCCCTCAATGGGATGTATTCCAGTTTAACATCTCATTCTCAATTGGAAGGCTGGAAATCAAGTGGGGGTGATCCTTGTGGCGACTCGTGGAAAGGAATCAAATGCTCAGGCTCATCGGTCACAAAAATAAATCTGTCTGGCCTGGGACTTACTGGATCAATGGGCTACCAGCTGGCAAACATGGCATCAGTTACCCACTTTGACTTGAGCAAAAACAACCTTAATGGTGATCTACCGTATCAACTTCCCCCAAATTCTCGGCACATTGATCTTTCCAAGAATAGCTTCACTGGAGTGGTTCCTTTTTCTATTTCTGAGATGACCAACCTTAACACCCTTAATCTTGCGCATAATCAACTCAATAATCAGCTGGGTGATATGTTTGGGAAACTCACTAAACTCAAACAAATGGATTTATCATTCAATTCACTGTCAGGAAATTTGCCGCAGAGTTTTAAATCACTCTCAGGCCTCAAAAAGTTGGATCTTCAAAATAATCAATTATCAGGTTCAATAAAAGTGCTTGGGAACCTTCCACTTGAAGAGTTGAATGTTGAAAATAACAAATTTTCTGGTTGGATCCCAGCAGAGCTAAAGAATATAAGTAGCTTGCAAACTGGAGGAAACTCTTGGTCAACACCTCCTCCTCCTCCTCCTGAAAAGGGAATTGGGAAACCTGCTGTTATTGGAATTGTATTGGGAAGCATAGCTTTTGTTTTGCTCGTAGTTAGTGTTATTGTTGCCGTTGTTAAAAAGAGATCATCTCTACCTCCTTTAAGATTTCTTGATGAAGAGCTTAACCACCATAGATCTCCTACACCTCTTGCATCTCAGGAATTATCCAACAATGTTTCTGAATTTAAGCCTTCGGATTCTGCTTTGATTGACATTAAGGCGTTACCAGAAGTTCCATCATCTAGTGCGAGGTCATCAGCTTCTGATTGTGTACAAACCTTGGATGATAACGAGATTACAAATCGTCTAAATGCTGCAAGAAGCATCTCGATTCGTGTTGTTCATCATTTTCCATTTGCAGATTTGCGGGCTGCTACTGGTAATTTTGCATCAAGCCGCCTTATTGGGAAAGGATCCATTGGATGTGTTTACCGGGCAAAATATGCTGATGGACAGGTTTTAGCTGTGAAAAAACTTGACTCTACCAAATTCCTTGGCAGCTCTCCAGAGGAATTCTCTCAGATTATATCAAAAATTTCCCATGTTCACCACCCAAATATTGCTAAGCTTGTTGGTTATTCTTCAGAACAAGGAGACAACATGTTAGTATATGAGTACTTCCGAAATGGCTCTCTTCATAAATTTTTACATGTGTCAGACGACTTCAGCAAGCCACTAACATGGAACACTAGAGTCAAAATCGCACTAGGCACTGCCCAAGCAATTGCGTACCTGCATGAAAGTTGTTCTCCACCTATAGTTCACAAGAATATCAAGTCTTCTAATATTGTGCTTGACAGTGAATTCAATCCTCATCTCTCAGACTGTGGCTTGGCATCCTTCCATCAGCGCCCTAGCCAAAATCTTGGGGCAGGATATAAAGCACCCGAGTGTTCAGTACCTGAAGCATATACCCTGAAGAGTGATGTGTACAGCTTTGGGGTAGTCATGCTGGAGCTGTTAACAGGTCGACAGCCTTTGGACAGGTCAAAGCCAATATCAGAACAATTTCTTGTTCTTTGGGCCACCCCTCAGCTTCATGACATTGTTTCATTGTCAAACATGGTGGACCCTTCCTTGCGAGGACTTTACCCTCCTAAATCACTCTCAATGCTTGCTGACATCATTGCTTTTTGTGTTCGGCCTGAGCCGAAATTTCGACCACAAATGTCGGAAGTGGTTGTCTCACTGTTAAGACTAGTTGAGCATTCAAATATGAACATGAGAGAGGATTTGGATCTTGGGATGGATGATAATGATGACTGA 2031 0.4244 MRHNLAGLWISLLAIFTTAVHCRTDSQDVSALNGMYSSLTSHSQLEGWKSSGGDPCGDSWKGIKCSGSSVTKINLSGLGLTGSMGYQLANMASVTHFDLSKNNLNGDLPYQLPPNSRHIDLSKNSFTGVVPFSISEMTNLNTLNLAHNQLNNQLGDMFGKLTKLKQMDLSFNSLSGNLPQSFKSLSGLKKLDLQNNQLSGSIKVLGNLPLEELNVENNKFSGWIPAELKNISSLQTGGNSWSTPPPPPPEKGIGKPAVIGIVLGSIAFVLLVVSVIVAVVKKRSSLPPLRFLDEELNHHRSPTPLASQELSNNVSEFKPSDSALIDIKALPEVPSSSARSSASDCVQTLDDNEITNRLNAARSISIRVVHHFPFADLRAATGNFASSRLIGKGSIGCVYRAKYADGQVLAVKKLDSTKFLGSSPEEFSQIISKISHVHHPNIAKLVGYSSEQGDNMLVYEYFRNGSLHKFLHVSDDFSKPLTWNTRVKIALGTAQAIAYLHESCSPPIVHKNIKSSNIVLDSEFNPHLSDCGLASFHQRPSQNLGAGYKAPECSVPEAYTLKSDVYSFGVVMLELLTGRQPLDRSKPISEQFLVLWATPQLHDIVSLSNMVDPSLRGLYPPKSLSMLADIIAFCVRPEPKFRPQMSEVVVSLLRLVEHSNMNMREDLDLGMDDNDD 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00842 676 ProSiteProfiles Leucine-rich repeat profile. 187 209 IPR001611 GO:0005515
Accr6g00842 676 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 462 666 - -
Accr6g00842 676 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Accr6g00842 676 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Accr6g00842 676 Gene3D Phosphorylase Kinase; domain 1 345 461 - -
Accr6g00842 676 ProSiteProfiles Protein kinase domain profile. 384 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr6g00842 676 Gene3D Ribonuclease Inhibitor 24 253 IPR032675 -
Accr6g00842 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 659 IPR046959 -
Accr6g00842 676 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Accr6g00842 676 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 350 461 - -
Accr6g00842 676 Pfam Protein tyrosine and serine/threonine kinase 387 651 IPR001245 GO:0004672|GO:0006468
Accr6g00842 676 Gene3D Transferase(Phosphotransferase) domain 1 462 673 - -
Accr6g00842 676 SUPERFAMILY L domain-like 23 236 - -
Accr6g00842 676 SUPERFAMILY Protein kinase-like (PK-like) 365 652 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00842 Accr-Chr6 17216856 17231797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00842 1 676 Strubbelig Receptor Gene Family AT1G78980 55.714 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Accr6g00842 PK_Tyr_Ser-Thr 6.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00842 - - qsa:O6P43_028034 885.174