Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00778 ATGGCTCAAGATCCTGTCTCTGATCTTCTCGTCGAACTGTTCTTTTTTTCTTCTGTCTTCTTCTGTTTCGTGGCCACCGAACTTCTCTGCATACAATACCCATTTTTCTCTGCTCTGTTTTTCCAACATGAAGAAGATCATCAATATGTCCCATTCACTTATTCTGAATTTCCTCAACCATCGAAATTGCTCAAGTTCATCCAACCCTCCTTCATCACTGCTCAACACAAGAACAATTCTTCTTCATCATCATCATCTTCTTCTTCATCATCTTCTTCTGCTTCTGCTTCTGCTTCTGCTTCTTCTTCTTCTAACCCAGAAAATAAGCATGTGAAGTCTTCCATTAAAGCTGAGGAACCCTTGCAATTGATCTGTGAAATATGTGCAGAAACTAAACGGATTACCCAGATGATCAAGAACAAGACATGCGACCATTCATATTGCTCTGATTGTATGACAAAACATGTGGTCACGAAAATCCAAGACACCATAACAGCAGTTCCATGTCCTGGTTTGGACTGTGAAAGTGTTTTTGATCTAGAAGCTTGTCGGCCATGGCTTCCCAGGGACTTAATTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAAGTGCCAAAACTTTATTGTCCCTTTAAGGATTGTTCAGCCATGATGCTGGTTGAGACTGAGGAGGAAGATCAAGGTGCAGGGGAAACAGAGTGCCCTGTTTGCCATAGAATGTTCTGTGCAAGGTGTAATGTCCGATGGCATCCTGGAGTTGACTGTTTGGAATACCAGAAACTAAACGAGAATGAGAGACAGAGGGAAGATCTGCTTGTGAGGCAGCTTGCTAAAGAGAAGAAATGGAGAAGGTGTCCAAAGTGTAGGTTCTATGTGGAGAAGATAATTGGATGCTTGCACATTACTTGCAGGTGTAAATATCAGTTTTGTTATGCATGTGGAAAAGAGTGGAATTCTACACACGGAGGTTGCCAAAGAAATTAG 993 0.4209 MAQDPVSDLLVELFFFSSVFFCFVATELLCIQYPFFSALFFQHEEDHQYVPFTYSEFPQPSKLLKFIQPSFITAQHKNNSSSSSSSSSSSSSSASASASASSSSNPENKHVKSSIKAEEPLQLICEICAETKRITQMIKNKTCDHSYCSDCMTKHVVTKIQDTITAVPCPGLDCESVFDLEACRPWLPRDLIERWDQALCEALFLQVPKLYCPFKDCSAMMLVETEEEDQGAGETECPVCHRMFCARCNVRWHPGVDCLEYQKLNENERQREDLLVRQLAKEKKWRRCPKCRFYVEKIIGCLHITCRCKYQFCYACGKEWNSTHGGCQRN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00778 330 Pfam Zinc finger, C3HC4 type (RING finger) 125 170 IPR018957 GO:0046872
Accr6g00778 330 CDD BRcat_RBR_unk 208 261 - -
Accr6g00778 330 FunFam RBR-type E3 ubiquitin transferase 121 206 - -
Accr6g00778 330 ProSiteProfiles TRIAD supradomain profile. 121 330 IPR044066 -
Accr6g00778 330 SUPERFAMILY RING/U-box 197 263 - -
Accr6g00778 330 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 80 321 IPR031127 GO:0004842|GO:0016567
Accr6g00778 330 SMART ibrneu5 268 327 IPR002867 GO:0008270
Accr6g00778 330 SMART ibrneu5 193 258 IPR002867 GO:0008270
Accr6g00778 330 SUPERFAMILY RING/U-box 123 202 - -
Accr6g00778 330 MobiDBLite consensus disorder prediction 78 114 - -
Accr6g00778 330 Gene3D - 255 330 - -
Accr6g00778 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 203 IPR013083 -
Accr6g00778 330 ProSiteProfiles Zinc finger RING-type profile. 125 170 IPR001841 -
Accr6g00778 330 MobiDBLite consensus disorder prediction 78 110 - -
Accr6g00778 330 CDD Rcat_RBR_unk 284 320 - -
Accr6g00778 330 ProSitePatterns Zinc finger RING-type signature. 143 152 IPR017907 -
Accr6g00778 330 FunFam RBR-type E3 ubiquitin transferase 260 330 - -
Accr6g00778 330 SUPERFAMILY RING/U-box 269 328 - -
Accr6g00778 330 Pfam IBR domain, a half RING-finger domain 208 258 IPR002867 GO:0008270
Accr6g00778 330 Pfam IBR domain, a half RING-finger domain 275 326 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00778 Accr-Chr6 15688420 15691501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00778 125 317 C3H Transcription Factor Family AT2G19610 29.851 5.54e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00778 K11975 - qsa:O6P43_027978 331.257