LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr6g00777	ATGGCTCAAGATCCTCTCTTTGATCTTCTCTTCGAATTGTTCTTTTTTTCTTGTTTCTTCTTATGTTTTGTGGCCACCGAACTTCTCCAACAACATGAAGAAGATCATCAATATGTCCCATTCACTTATTCTGAATTTCCTCAACCATCGAAATTGCTCAAGTTCATCCAACCCTCCTTCATCACTGCTCAACACAACAACAATTCTTCTTCATTTTCATCATCGTCTTCTTCTTCATGTCCATCTTCTTCTTCCTATGCTTCTGCTTCATCATCATCTTCTTCTAACCCAGAAAATAAGCATGTGAAATCTTCAATTAAATCTGAGGACCCCTTGCAAGTGATCTGTGAAATCTGTGCAGAAACTAAATGGATTACCCAGATGATCAGGAACAAGACGTGCGACCATTCATATTGCTCTGATTGTATGACAAAACATGTGGTCACGAAAATCCAAGACAGTATAACAGCAGTTCCATGTCCTGGTTTGGATTGTGAAAGTGTTTTTGAGCTGGAAGCTTGTCGGCCATGGCTTCCCAGGGACATAATTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTTTGTTTCTGAAAGTGCCTAAATTTTACTGTCCCTTTAAGGATTGTTCAGCCATGATGCTGGTTGAGAATGAGGAAGATCAAGGTGCAGAGGAAACAGAGTGCCTTGCTTGCCATAGAATGTTCTGTGCAAGGTGTAATGTCTCATGGCATCCTGGAGTTGACTGTGAGGAATACCAGAAACTAAACGAGAATGAGAGACAGAGGGAAGATCTGCTTGTGCGGCAGCTTGCTAAAGAGAAGAAATGGAGAAGGTGTCCAAAGTGTAGGTTCTATGTGGAGAAGTTAATTGGATGTTTGCACATTACTTGCAGGTGTAAATATCAGTTTTGTTATGCATGTGGAGAAGAGTGGAATTCTACACACGGAGGTTGCCAGAGAAATTAG	963	0.4133	MAQDPLFDLLFELFFFSCFFLCFVATELLQQHEEDHQYVPFTYSEFPQPSKLLKFIQPSFITAQHNNNSSSFSSSSSSSCPSSSSYASASSSSSSNPENKHVKSSIKSEDPLQVICEICAETKWITQMIRNKTCDHSYCSDCMTKHVVTKIQDSITAVPCPGLDCESVFELEACRPWLPRDIIERWDQALCEALFLKVPKFYCPFKDCSAMMLVENEEDQGAEETECLACHRMFCARCNVSWHPGVDCEEYQKLNENERQREDLLVRQLAKEKKWRRCPKCRFYVEKLIGCLHITCRCKYQFCYACGEEWNSTHGGCQRN	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr6g00777	320	SMART	ibrneu5	258	317	IPR002867	GO:0008270
	Accr6g00777	320	SMART	ibrneu5	184	248	IPR002867	GO:0008270
	Accr6g00777	320	Gene3D	-	244	320	-	-
	Accr6g00777	320	ProSitePatterns	Zinc finger RING-type signature.	134	143	IPR017907	-
	Accr6g00777	320	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	69	311	IPR031127	GO:0004842\|GO:0016567
	Accr6g00777	320	FunFam	RBR-type E3 ubiquitin transferase	250	320	-	-
	Accr6g00777	320	CDD	Rcat_RBR_unk	274	310	-	-
	Accr6g00777	320	ProSiteProfiles	TRIAD supradomain profile.	112	320	IPR044066	-
	Accr6g00777	320	CDD	BRcat_RBR_unk	199	251	-	-
	Accr6g00777	320	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	112	194	IPR013083	-
	Accr6g00777	320	Pfam	Zinc finger, C3HC4 type (RING finger)	116	161	IPR018957	GO:0046872
	Accr6g00777	320	ProSiteProfiles	Zinc finger RING-type profile.	116	161	IPR001841	-
	Accr6g00777	320	SUPERFAMILY	RING/U-box	114	193	-	-
	Accr6g00777	320	SUPERFAMILY	RING/U-box	259	318	-	-
	Accr6g00777	320	Pfam	IBR domain, a half RING-finger domain	200	248	IPR002867	GO:0008270
	Accr6g00777	320	Pfam	IBR domain, a half RING-finger domain	265	316	IPR002867	GO:0008270
	Accr6g00777	320	FunFam	RBR-type E3 ubiquitin transferase	112	197	-	-
	Accr6g00777	320	SUPERFAMILY	RING/U-box	188	253	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr6g00777	Accr-Chr6	15656128	15659166	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr6g00777	132	307	C3H Transcription Factor Family	AT2G19610	30.811	2.50e-19	86.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr6g00777	K11975		-	qsa:O6P43_027978	327.791