Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr6g00776 | ATGGCTCAAGACCCTATCTCTGATCTTCTCTTTGAATTGTTCTTTTTTTCTTCTTTCTTCTTCTGTTTTGTGGCCACCGAACTTCTCTGCATACAATACCCATTTTTCTCTGCTCTGTTTTTCCAACAACATGAAGAAGATCATCAATATGTCCCATTCACTTATTCTGAATTTCCTCAACCATCGAAATTGCTCAAGTTCATCCAACCCTCCTTCATCACTGCTCAACGCAAAAACAATTCTTCTTCTTCATCATCATCTTCTTCTTCTTCATCTTCATCTTCCTATGCTTCTGCTTCATCATCATCTTCTTCTAACCCAGAAAATAAGCATGTGAAATCTTCAATTAAAGCTGATGAACCCTTGGAAGTGATCTGTGAAATCTGTGCAGAAACTAAACAGATGACCCAGATGATCAAGAACAAGACATGCGACCATTCATATTGTTCTGATTGTATGACAAAACATGTGGTCACGAAAATCCAAGACAGTATAACAGCAGTTCCATGTCCTGGTTTGAATTGTGAAAGTGTTTTTGAGCTGGAAGCTTGTCGGCCATGGCTTCCCAGGGACTTAATTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGAAAGTGCCTAAATTTTACTGTCCCTTTAAGGATTGTTCAGCCATGATGCTGGTTGAGAATGAGGAAGATCAAAGTGCCGGGGAAACACAATGCCCTGTTTGCCATAGAATGTTCTGTGCAAGGTGTAATGTCCCATGGCATCCTGGAGTTGACTGTGAGGAATACCAGAAACTAAACGAGAATGAGAGACAGAGGGAAGATTTGCTTGTGAGGCAGCTTGCTAAAGAGAAGAAATGGAGAAGGTGTCCAAAGTGTAGGTTCTATGTGGAGAAGATAATTGGATGCTTGCACATTACTTGCAGGTGTAAATATGAGTTTTGTTATGCATGTGGAGGAGAGTGGAGTTCCACACATGGAGGTTGCCAAAGAAATTAG | 993 | 0.4099 | MAQDPISDLLFELFFFSSFFFCFVATELLCIQYPFFSALFFQQHEEDHQYVPFTYSEFPQPSKLLKFIQPSFITAQRKNNSSSSSSSSSSSSSSSYASASSSSSSNPENKHVKSSIKADEPLEVICEICAETKQMTQMIKNKTCDHSYCSDCMTKHVVTKIQDSITAVPCPGLNCESVFELEACRPWLPRDLIERWDQALCEALFLKVPKFYCPFKDCSAMMLVENEEDQSAGETQCPVCHRMFCARCNVPWHPGVDCEEYQKLNENERQREDLLVRQLAKEKKWRRCPKCRFYVEKIIGCLHITCRCKYEFCYACGGEWSSTHGGCQRN | 330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr6g00776 | 330 | SUPERFAMILY | RING/U-box | 123 | 203 | - | - | |
| Accr6g00776 | 330 | ProSitePatterns | Zinc finger RING-type signature. | 144 | 153 | IPR017907 | - | |
| Accr6g00776 | 330 | SUPERFAMILY | RING/U-box | 198 | 263 | - | - | |
| Accr6g00776 | 330 | FunFam | RBR-type E3 ubiquitin transferase | 260 | 330 | - | - | |
| Accr6g00776 | 330 | Pfam | Zinc finger, C3HC4 type (RING finger) | 126 | 171 | IPR018957 | GO:0046872 | |
| Accr6g00776 | 330 | Pfam | IBR domain, a half RING-finger domain | 275 | 327 | IPR002867 | GO:0008270 | |
| Accr6g00776 | 330 | Pfam | IBR domain, a half RING-finger domain | 210 | 258 | IPR002867 | GO:0008270 | |
| Accr6g00776 | 330 | SUPERFAMILY | RING/U-box | 269 | 328 | - | - | |
| Accr6g00776 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 204 | IPR013083 | - | |
| Accr6g00776 | 330 | Gene3D | - | 255 | 330 | - | - | |
| Accr6g00776 | 330 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 77 | 322 | IPR031127 | GO:0004842|GO:0016567 | |
| Accr6g00776 | 330 | SMART | ibrneu5 | 268 | 327 | IPR002867 | GO:0008270 | |
| Accr6g00776 | 330 | SMART | ibrneu5 | 194 | 258 | IPR002867 | GO:0008270 | |
| Accr6g00776 | 330 | FunFam | RBR-type E3 ubiquitin transferase | 122 | 207 | - | - | |
| Accr6g00776 | 330 | ProSiteProfiles | Zinc finger RING-type profile. | 126 | 171 | IPR001841 | - | |
| Accr6g00776 | 330 | CDD | Rcat_RBR_unk | 284 | 320 | - | - | |
| Accr6g00776 | 330 | CDD | BRcat_RBR_unk | 209 | 261 | - | - | |
| Accr6g00776 | 330 | ProSiteProfiles | TRIAD supradomain profile. | 122 | 330 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr6g00776 | Accr-Chr6 | 15642957 | 15646307 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr6g00776 | 126 | 318 | C3H Transcription Factor Family | AT2G19610 | 29.703 | 3.29e-19 | 85.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr6g00776 | K11975 | - | qsa:O6P43_027978 | 338.576 |