Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr6g00775 | ATGATTCTCTTACCATCTAATGATTTTGAATGTGCTGAATGCTCTTCTTTGTCTTCTTCTTCTGGCCCAGTGAAGTCTAAAATCAAAAAAGAACCCTTGCAAGTCATATGTGAAATCTGTGCAGAAACCAAACGAATTACCGAGATGATCAAGAACCAGACATGCCGCCATTCGTATTGCTCTGATTGTATGACAAAACATGTGGCCACCAAAATCCAAGACATTACAACAGCAGTTCCATGTCCTGGTTTGGGTGGTAGAAGTGTTTTTGATTTAGAAGGTTGTCGGCCATGGCTTCCCAAGGACTTAGTTGAAAGGTGGGATAAGGCTCTGTGTGAAGATCTGTTTCTGCAAGTGCCTAAATTTTACTGTCCATTTAAGGATTGTTCAGCCATGATGCTGGTTGAGAACGAGGAAGATCAACAAGCAAGAGAAACAGAGTGCCCTGTTTGCCATAGAATGTTCTGTGCTAGGTGTAGTATTCCATGGCATATTGGAATTAACTGTAAGGAATACCAGAAACAGAAAGAGAATGAGAGGCAGAGGGAAGATCTTCTTATGAGGAAGCTCTCTAAAGAAAAGAGATGGCGAAGGTGTCCAAAGTGTAAGATTTATGTGGAGAAGATAAGTGGATGCGTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTACGACTGCGGACAACAATGGTGTTTTGCTCATACTCATCCTTCCCACGGAAGAAATTAG | 732 | 0.4153 | MILLPSNDFECAECSSLSSSSGPVKSKIKKEPLQVICEICAETKRITEMIKNQTCRHSYCSDCMTKHVATKIQDITTAVPCPGLGGRSVFDLEGCRPWLPKDLVERWDKALCEDLFLQVPKFYCPFKDCSAMMLVENEEDQQARETECPVCHRMFCARCSIPWHIGINCKEYQKQKENERQREDLLMRKLSKEKRWRRCPKCKIYVEKISGCVHITCRCKYEFCYDCGQQWCFAHTHPSHGRN | 243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr6g00775 | 243 | SUPERFAMILY | RING/U-box | 111 | 175 | - | - | |
| Accr6g00775 | 243 | SUPERFAMILY | RING/U-box | 180 | 239 | - | - | |
| Accr6g00775 | 243 | Pfam | IBR domain, a half RING-finger domain | 186 | 236 | IPR002867 | GO:0008270 | |
| Accr6g00775 | 243 | Pfam | IBR domain, a half RING-finger domain | 110 | 169 | IPR002867 | GO:0008270 | |
| Accr6g00775 | 243 | Coils | Coil | 169 | 193 | - | - | |
| Accr6g00775 | 243 | SMART | ibrneu5 | 105 | 169 | IPR002867 | GO:0008270 | |
| Accr6g00775 | 243 | SMART | ibrneu5 | 179 | 239 | IPR002867 | GO:0008270 | |
| Accr6g00775 | 243 | Gene3D | - | 166 | 243 | - | - | |
| Accr6g00775 | 243 | CDD | Rcat_RBR_unk | 195 | 231 | - | - | |
| Accr6g00775 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 82 | IPR001841 | - | |
| Accr6g00775 | 243 | CDD | BRcat_RBR_unk | 120 | 172 | - | - | |
| Accr6g00775 | 243 | FunFam | RBR-type E3 ubiquitin transferase | 32 | 118 | - | - | |
| Accr6g00775 | 243 | ProSitePatterns | Zinc finger RING-type signature. | 55 | 64 | IPR017907 | - | |
| Accr6g00775 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 115 | IPR013083 | - | |
| Accr6g00775 | 243 | SUPERFAMILY | RING/U-box | 35 | 114 | - | - | |
| Accr6g00775 | 243 | ProSiteProfiles | TRIAD supradomain profile. | 33 | 243 | IPR044066 | - | |
| Accr6g00775 | 243 | Pfam | Zinc finger, C3HC4 type (RING finger) | 37 | 82 | IPR018957 | GO:0046872 | |
| Accr6g00775 | 243 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 13 | 237 | IPR031127 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr6g00775 | Accr-Chr6 | 15612665 | 15613781 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr6g00775 | 37 | 228 | C3H Transcription Factor Family | AT2G19610 | 28.571 | 5.53e-17 | 77.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr6g00775 | K11975 | - | qsa:O6P43_027978 | 290.041 |