Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00774 ATGAAGTCTTCAATAAAAAAAGAAGAACCTTTGCAAGTCATATGTGAAATCTGTGCAGAAACCAAACGAATTACCGAGATGATCAAGAACCAGACATGCCGCCATTCGTATTGCTCTGATTGTATGACAAAACACGTGGCCACCAAAATCCAAGACATTATAACAGCAGTTCCATGTCCTGGTTTGGGTTGTAAAAGTGTTTTTGAGTTTGAAGGTTGTCGGCCATGGCTTCCCAAGGACTTAATTGAAAGGTGGGATAAGGCTCTGTGTGAAGCTCTGTTTCTGCAAGTGCCTAAATTTTACTGTCCATTTAAGGATTGTTCAGCCATGATGCTGGTTGAGAACGAGGAAGATCAACAAGCAAGAGAAACAGAGTGCCCTGTTTGCCATAGAATGTTCTGTGCTAGGTGTAGTATTCCATGGCATATTGGAGTTAACTGTAAGCAATACCAGAAACAAATTGAGAATGAGAGGCAGAGGGAAGATCGTCTTATGAGAAAGCTTGCTAAAGAAAAGAGATGGCGAAGGTGTCCAAAGTGTAAGATTTATGTGGAGAAGATAAGTGGATGCGTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTACGACTGCGGACAACAATGGTGTTTTGCTCATACTCATCCTTCCCACGGAAGAAATTAG 666 0.4144 MKSSIKKEEPLQVICEICAETKRITEMIKNQTCRHSYCSDCMTKHVATKIQDIITAVPCPGLGCKSVFEFEGCRPWLPKDLIERWDKALCEALFLQVPKFYCPFKDCSAMMLVENEEDQQARETECPVCHRMFCARCSIPWHIGVNCKQYQKQIENERQREDRLMRKLAKEKRWRRCPKCKIYVEKISGCVHITCRCKYEFCYDCGQQWCFAHTHPSHGRN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00774 221 Gene3D - 149 221 - -
Accr6g00774 221 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 215 IPR031127 GO:0004842|GO:0016567
Accr6g00774 221 ProSiteProfiles TRIAD supradomain profile. 11 221 IPR044066 -
Accr6g00774 221 SUPERFAMILY RING/U-box 86 153 - -
Accr6g00774 221 CDD BRcat_RBR_unk 98 150 - -
Accr6g00774 221 Coils Coil 147 171 - -
Accr6g00774 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 93 IPR013083 -
Accr6g00774 221 FunFam RBR-type E3 ubiquitin transferase 10 96 - -
Accr6g00774 221 Gene3D - 100 148 - -
Accr6g00774 221 Pfam Zinc finger, C3HC4 type (RING finger) 15 60 IPR018957 GO:0046872
Accr6g00774 221 SUPERFAMILY RING/U-box 13 92 - -
Accr6g00774 221 Pfam IBR domain, a half RING-finger domain 98 147 IPR002867 GO:0008270
Accr6g00774 221 Pfam IBR domain, a half RING-finger domain 163 214 IPR002867 GO:0008270
Accr6g00774 221 SUPERFAMILY RING/U-box 158 217 - -
Accr6g00774 221 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Accr6g00774 221 ProSiteProfiles Zinc finger RING-type profile. 15 60 IPR001841 -
Accr6g00774 221 SMART ibrneu5 157 217 IPR002867 GO:0008270
Accr6g00774 221 SMART ibrneu5 83 147 IPR002867 GO:0008270
Accr6g00774 221 CDD Rcat_RBR_unk 173 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00774 Accr-Chr6 15607396 15608452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00774 15 206 C3H Transcription Factor Family AT2G19610 27.861 5.34e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00774 K11975 - qsa:O6P43_027978 296.975