Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr6g00773 | ATGGCCCAAGGCTCTGCCTTTGATATTTTCATTTTCCCGGTCTTCTTTTATTTTTGGGCCTCCAAGTTTTTCCACACCGAACAACCACTTTGCTCTGCTCTGTTTTTCCTAGGACATGAAAATCAACAACGTGTCCCATCTAATGATTTTGAATGTGCTGAATGCTCTTCTTCGTCTTCTTCTTCTGGCCCAGAAACTGAGAAAGTGAAGTCTTCAATCAAAAAAGAAGAACCTTTGCAAGTCATATGTGAAATCTGTGCAGAAACCAAACGAATTACCGAGATGATCAAGAACCAGACATGCCGCCATTCGTATTGCTCTGATTGTATGACAAAACATGTGGCCACCAAAATCCAAGACATTATAACAGCAGTTCCATGTCCTGGTTTGGATTGTAAAAGTGTTTTTGAGTTAGAAACTTGTCGGCCATGGCTTCCCAAGGACTTAGTTGAAAGGTGGGATAAGGCTCTGTGTGAAGCTCTGTTTCTGCAAGTGCATAAATTTTACTGTCCCTTTAAGGATTGTTCAGCCATGATGCTGGTTGAGAACGAGGAAGATCAACAAGCAGGAGAAACAGAGTGCCCTGTTTGCCATAGAATGTTCTGTGCTAGGTGTAGTATTCCATGGCATATTGGAATTAACTGTGAGGAATACCAGAAACAAAAAGAGAATGAGAGGCAGAGGGAAGATCTTCTTATGAGAAAGCTTGCTAAAGAAAAGAGATGGCGAAGGTGTCCAAAGTGTAATGTGGAGAAGATAAGTGGATGCGTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTACGACTGCGGACAACAATGGTGTTTCTCTCATACTCATCCTTCCCACGGAGGAAATTAG | 864 | 0.419 | MAQGSAFDIFIFPVFFYFWASKFFHTEQPLCSALFFLGHENQQRVPSNDFECAECSSSSSSSGPETEKVKSSIKKEEPLQVICEICAETKRITEMIKNQTCRHSYCSDCMTKHVATKIQDIITAVPCPGLDCKSVFELETCRPWLPKDLVERWDKALCEALFLQVHKFYCPFKDCSAMMLVENEEDQQAGETECPVCHRMFCARCSIPWHIGINCEEYQKQKENERQREDLLMRKLAKEKRWRRCPKCNVEKISGCVHITCRCKYEFCYDCGQQWCFSHTHPSHGGN | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr6g00773 | 287 | Pfam | IBR domain, a half RING-finger domain | 156 | 215 | IPR002867 | GO:0008270 | |
| Accr6g00773 | 287 | Pfam | IBR domain, a half RING-finger domain | 232 | 280 | IPR002867 | GO:0008270 | |
| Accr6g00773 | 287 | ProSiteProfiles | TRIAD supradomain profile. | 79 | 287 | IPR044066 | - | |
| Accr6g00773 | 287 | ProSiteProfiles | Zinc finger RING-type profile. | 83 | 128 | IPR001841 | - | |
| Accr6g00773 | 287 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 52 | 277 | IPR031127 | GO:0004842|GO:0016567 | |
| Accr6g00773 | 287 | SUPERFAMILY | RING/U-box | 154 | 221 | - | - | |
| Accr6g00773 | 287 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 161 | IPR013083 | - | |
| Accr6g00773 | 287 | Coils | Coil | 215 | 235 | - | - | |
| Accr6g00773 | 287 | Gene3D | - | 211 | 286 | - | - | |
| Accr6g00773 | 287 | SUPERFAMILY | RING/U-box | 81 | 160 | - | - | |
| Accr6g00773 | 287 | CDD | BRcat_RBR_unk | 167 | 218 | - | - | |
| Accr6g00773 | 287 | ProSitePatterns | Zinc finger RING-type signature. | 101 | 110 | IPR017907 | - | |
| Accr6g00773 | 287 | FunFam | RBR-type E3 ubiquitin transferase | 78 | 164 | - | - | |
| Accr6g00773 | 287 | Pfam | Zinc finger, C3HC4 type (RING finger) | 83 | 128 | IPR018957 | GO:0046872 | |
| Accr6g00773 | 287 | SUPERFAMILY | RING/U-box | 226 | 281 | - | - | |
| Accr6g00773 | 287 | CDD | Rcat_RBR_unk | 241 | 275 | - | - | |
| Accr6g00773 | 287 | SMART | ibrneu5 | 225 | 286 | IPR002867 | GO:0008270 | |
| Accr6g00773 | 287 | SMART | ibrneu5 | 151 | 215 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr6g00773 | Accr-Chr6 | 15595771 | 15597023 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr6g00773 | 83 | 272 | C3H Transcription Factor Family | AT2G19610 | 28.713 | 2.44e-17 | 79.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr6g00773 | K11975 | - | qsa:O6P43_027978 | 292.352 |