Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00772 ATGCTTCTGTTTGTTCTTCAGAAACTGAGCGGCTTTTTCCAATACTTCTGTTTCTTCTTCTTGGCTTTTTCCAGTGCTTCTGTTTCTTCTTCTTCTAACCCAGAAACTGAGCATGTGACGTCTTCAATTGAAACAGACGAAACCTTGCAAGTCATCATCTGTGAAATCTGTACAGACACCAAACGAATTACCCAGATGATCAAGAACCAGACATGCCACCATTCGTATTGCTCTGATTGTATGACAAAACATGTGGTCGCCAAAATCCAAGACAGTATAATAACAGTTCCATGTCCTGGTTTGGATTGTAAAAGTGTTTTTGAGCTGGAAGCTTGTCGGCCATGGCTTCCCAAAGACTTATTTGAAAGGTGGAATAAGGCTCGGTGTGAAGTTCTGTTTCTGCAAGTGCCTAAATTTTACTGTCCCTTTGAGGATTGTTCAGCCATGATGCTGGTTGAGAATGAGAAAGATCAACAAACTGGAGGGAAAACAGAGTGCCCTGTTTGTCATAGATTGTTCTGTCCCAGGTGTAATGTTCCATGGCATACTGGAGTTGGCTGTAAGAAATACCAGAAACTGAATAAGAATAAGAGACAGAGTGAAGATCGGCTTGTGAGAAAGCTTGCTAAAGAAAAGAGATGGCAAAGGTGTCCAAAGTGCAAGTTTTATGTGGAGAAGATAAGTGGATGCGTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTATGTTTGTGGGAGAGAATGGAGTTTCCTTCATGGAAGCAGGTGTTTAAGCAATCGACTATTCTAA 792 0.4116 MLLFVLQKLSGFFQYFCFFFLAFSSASVSSSSNPETEHVTSSIETDETLQVIICEICTDTKRITQMIKNQTCHHSYCSDCMTKHVVAKIQDSIITVPCPGLDCKSVFELEACRPWLPKDLFERWNKARCEVLFLQVPKFYCPFEDCSAMMLVENEKDQQTGGKTECPVCHRLFCPRCNVPWHTGVGCKKYQKLNKNKRQSEDRLVRKLAKEKRWQRCPKCKFYVEKISGCVHITCRCKYEFCYVCGREWSFLHGSRCLSNRLF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00772 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 132 IPR013083 -
Accr6g00772 263 ProSiteProfiles Zinc finger RING-type profile. 54 99 IPR001841 -
Accr6g00772 263 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 34 249 IPR031127 GO:0004842|GO:0016567
Accr6g00772 263 Coils Coil 190 210 - -
Accr6g00772 263 SUPERFAMILY RING/U-box 200 254 - -
Accr6g00772 263 ProSiteProfiles TRIAD supradomain profile. 50 263 IPR044066 -
Accr6g00772 263 CDD BRcat_RBR_unk 137 190 - -
Accr6g00772 263 SUPERFAMILY RING/U-box 129 192 - -
Accr6g00772 263 Gene3D - 184 261 - -
Accr6g00772 263 SUPERFAMILY RING/U-box 50 130 - -
Accr6g00772 263 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Accr6g00772 263 SMART ibrneu5 122 187 IPR002867 GO:0008270
Accr6g00772 263 SMART ibrneu5 197 257 IPR002867 GO:0008270
Accr6g00772 263 FunFam RBR-type E3 ubiquitin transferase 50 135 - -
Accr6g00772 263 CDD Rcat_RBR_unk 213 249 - -
Accr6g00772 263 Pfam IBR domain, a half RING-finger domain 203 254 IPR002867 GO:0008270
Accr6g00772 263 Pfam IBR domain, a half RING-finger domain 138 187 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00772 Accr-Chr6 15526162 15528104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00772 70 246 C3H Transcription Factor Family AT2G19610 29.570 7.42e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00772 K11975 - qsa:O6P43_017903 296.589