Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00771 ATGGCTCAAAATTCCGCCTCTGATCTTCTCTGTTCTGATGATTTTTTCCTTTCTGCTCTGTTTCACGCTGATGATGATGATAATTTTGATGCCCCATTTACCGATGATGAATTTGCCAAACGCTTGCAGTTTCAGGAAACCCTCTATTCCTCCGTCACTTCAAAAAAGCCCGAAAATGATCCTCAATCATCATCGTCACCACTATCATCGTCATCTTCTTCTTCTTTGCACCTTTTACCTTCATCTTCATCACCTCACCCGGCCTTAAAAATGGCTGACATTTGCCCTACCCCAAAAACTGAGCACCTGAAACACTCAGATGAAACGGATGAATCCTGGCAAGTCATTTGCGAAATCTGTGCAGAAACTAAAGAGGCTTCCCAGATGTTCACAAATCAGAGATGCGACCACTCGTTTTGTTCTGATTGTGTCACAAAACATGTGGCCACAAAAATTCAGGAGAACATTACAGAAGTTGCTTGCCCTGGTTTGGATTGTAAGAATGTTGTTGGGCTTGATGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGATAGGTGGGATCAAGCTCTGTGTGAAGCTATGTTTCTAGCAACCCCTAAATTTTACTGCCCCTTTAAGGATTGTTCTGCCATGTTGTTGATTGAGATTGAAGAAGATATAAGGGAAGCAGAGTGCCCTTTTTGCCACAGATTGTTCTGTGCAAGGTGCGAGGTGCCATGGCATCCTGGGGTTGAATGTGAGGAATTTCAGAGACTGAATGAGAATGAAAAAGAGAGGCAAGATTTGATTGTGAGAGAGCTTGCTAAAGAGAAGAAATGGAAAAGGTGTCCCAATTGTAAGTTCTATGTGGAGAAGGATGGAGGATGCTTGCACATCACTTGCAGGTGCAAATATGAGTTTTGCTATGGGTGTGGAGAACAGTGGACTGCTACTCATGGAGGCTGCCAAACAAATTAA 960 0.4354 MAQNSASDLLCSDDFFLSALFHADDDDNFDAPFTDDEFAKRLQFQETLYSSVTSKKPENDPQSSSSPLSSSSSSSLHLLPSSSSPHPALKMADICPTPKTEHLKHSDETDESWQVICEICAETKEASQMFTNQRCDHSFCSDCVTKHVATKIQENITEVACPGLDCKNVVGLDACRPWLPKDLLDRWDQALCEAMFLATPKFYCPFKDCSAMLLIEIEEDIREAECPFCHRLFCARCEVPWHPGVECEEFQRLNENEKERQDLIVRELAKEKKWKRCPNCKFYVEKDGGCLHITCRCKYEFCYGCGEQWTATHGGCQTN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00771 319 Pfam Zinc finger, C3HC4 type (RING finger) 117 162 IPR018957 GO:0046872
Accr6g00771 319 Pfam IBR domain, a half RING-finger domain 266 316 IPR002867 GO:0008270
Accr6g00771 319 Pfam IBR domain, a half RING-finger domain 191 247 IPR002867 GO:0008270
Accr6g00771 319 CDD Rcat_RBR_unk 273 309 - -
Accr6g00771 319 Gene3D - 202 248 - -
Accr6g00771 319 ProSiteProfiles TRIAD supradomain profile. 113 319 IPR044066 -
Accr6g00771 319 SUPERFAMILY RING/U-box 258 317 - -
Accr6g00771 319 CDD BRcat_RBR_unk 198 250 - -
Accr6g00771 319 SMART ibrneu5 185 247 IPR002867 GO:0008270
Accr6g00771 319 SMART ibrneu5 257 316 IPR002867 GO:0008270
Accr6g00771 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 196 IPR013083 -
Accr6g00771 319 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 309 IPR031127 GO:0004842|GO:0016567
Accr6g00771 319 FunFam RBR-type E3 ubiquitin transferase 112 198 - -
Accr6g00771 319 MobiDBLite consensus disorder prediction 50 91 - -
Accr6g00771 319 ProSitePatterns Zinc finger RING-type signature. 135 144 IPR017907 -
Accr6g00771 319 SUPERFAMILY RING/U-box 191 252 - -
Accr6g00771 319 Gene3D - 249 319 - -
Accr6g00771 319 FunFam RBR-type E3 ubiquitin transferase 249 319 - -
Accr6g00771 319 SUPERFAMILY RING/U-box 114 194 - -
Accr6g00771 319 MobiDBLite consensus disorder prediction 50 82 - -
Accr6g00771 319 ProSiteProfiles Zinc finger RING-type profile. 117 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00771 Accr-Chr6 15507627 15508997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00771 117 306 C3H Transcription Factor Family AT2G19610 31.000 1.54e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00771 K11975 - qsa:O6P43_027978 389.423