Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00760 ATGACGGATGCTTGCAAAAAGTCCTCCGTTTTAGGTCAGTCATATAGTTCTCTCTATGTCAATCCGCTCACTGAACTCCGGCATAGCCGTAGCTGCAGCGACAGTGACAGCTTAGCTTGCAAATGTCAGAAATGTGAAGATTTCTCGCTCAGAGAAGTTTCAACTGATAATAAAGAAAATGTCACGCCCAAGAAGAAAGATGTAACTCGCTTTTGTGACAAGGAAAATGCAGTGCCTGCAAATGGGTCATCTTCTTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTATCTACAGATAGAATTTCAAAGCCCAACTCGCTTCAGTTCTGTATGCAAATGAACGAGCCTGAAAAGGCTTTTGGGTGCAAGATATGGGATAATGTATATTCTGAAAATTTGAGCTCTTTAAAAATTTGGGATTTCTCTGATTCCGAGGCAGCCCCATCTTCTTCCTGGTCAACCTTGCCCAATAAGTCCTTGATCTGTAGACCGTTGCCTATAGATATTGGAATGTGTACTTGCATCATTGTAAAGGAAGCAAAGCCAGAGGGACTATCTGGGGGCACTGTGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTATCACAAGAGGCGGAATGGGAGGTCACAGTTCATTGTAGCTCAGAATGTGAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAACGGCTAACGTCCTGGGTTCTAAGTACCAAATTTGGGATCAGGGATATCGCCATAATTTGCTCGATAAACAGCTAAAACCGCCTCTTGCTGTTGTGATGTTTGTACCTACAGCAGCAACATGCACTGGAAGCTACAGAAGCATGAGAGCATATGTACCAAAGCATCAATCTATGTTACTAAAGAACATAACCCAGGTACAACATATCAAAGGACTACCCAGAGATTGGGAGGGAAAGTTGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTATAACAAGAATTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTGGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAGACAATTCTTCAACTGGGTAGAATGGGAAAATCAAAATTTATTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTCTGCTTAAGTTTAGCTTCCATTGATACCAAGCTTTGCTGCTCTGTGTAG 1245 0.4177 MTDACKKSSVLGQSYSSLYVNPLTELRHSRSCSDSDSLACKCQKCEDFSLREVSTDNKENVTPKKKDVTRFCDKENAVPANGSSSLPKHFSKSKSLSTDRISKPNSLQFCMQMNEPEKAFGCKIWDNVYSENLSSLKIWDFSDSEAAPSSSWSTLPNKSLICRPLPIDIGMCTCIIVKEAKPEGLSGGTVYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANVLGSKYQIWDQGYRHNLLDKQLKPPLAVVMFVPTAATCTGSYRSMRAYVPKHQSMLLKNITQVQHIKGLPRDWEGKLDKVHQLFSRVPLYNKNSKQFELDFKDKGRAELGIQRSVKNFQLTLEENGRQTILQLGRMGKSKFIMDYRYPLTGYQAFCLSLASIDTKLCCSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00760 414 Pfam Tub family 163 408 IPR000007 -
Accr6g00760 414 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Accr6g00760 414 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Accr6g00760 414 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Accr6g00760 414 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Accr6g00760 414 SUPERFAMILY Tubby C-terminal domain-like 149 412 IPR025659 -
Accr6g00760 414 MobiDBLite consensus disorder prediction 79 99 - -
Accr6g00760 414 Gene3D Tubby Protein; Chain A 153 413 IPR025659 -
Accr6g00760 414 PANTHER TUBBY-RELATED 76 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00760 Accr-Chr6 15310039 15312817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00760 49 307 TUB Transcription Factor Family AT1G16070 55.056 1.27e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr6g00760 Tub 6.1e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00760 K19600 - cave:132188154 562.377