Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00759 ATGACGGATGCTTGCAAAAAGTCCTCCGTTTTAGGTCAGTCATATAGTTCTCTCTATGTCAATCCGCTCACTGAACTCCGGCATAGCCGTAGCTGCAGCGACAGTGACAGCTTAGCTTGCAAATGTCAGAAATGTGAAGATTTCTCGCTCAGAGAAGTTTCAACTGATAATAAAGAAAATGTCACGCCCAAGAAGAAAGATGTAACTCGCTTTTGTGACAAGGAAAATGCAGTGCCTGCAAATGGGTCATCTTCTTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTATCTACAGATAGAATTTCAAAGCCCAACTCGCTTCAGTTCTGTATGCAAATGAACGAGCCTGAAAAGGCTTTTGGGTGCAAGATATGGGATAATGTATATTCTGAAAATTTGAGCTCTTTAAAAATTTGGGATTTCTCTGATTCCGAGGCAGCCCCATCTTCTTCCTGGTCAACCTTGCCCAATAAGTCCTTGATCTGTAGACCGTTGCCTATAGATATTGGAATGTGTACTTGCATCATTGTAAAGGAAGCAAAGCCAGAGGGACTATCTGGGGGCACTGTGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTATCACAAGAGGCGGAATGGGAGGTCACAGTTCATTGTAGCTCAGAATGTGAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAACGGCTAACGTCCTGGGTTCTAAGTACCAAATTTGGGATCAGGGATATCGCCATAATTTGCTCGATAAACAGCTAAAACCGCCTCTTGCTGTTGTGATGTTTGTACCTACAGCAGCAACATGCACTGGAAGCTACAGAAGCATGAGAGCATATGTACCAAAGCATCAATCTATGTTACTAAAGAACATAACCCAGGTACAACATATCAAAGGACTACCCAGAGATTGGGAGGGAAAGTTGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTATAACAAGCAGAATTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTGGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAGACAATTCTTCAACTGGGTAGAATGGGAAAATCAAAATTTATTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTCTGCTTAAGTTTAGCTTCCATTGATACCAAGCTTTGCTGCTCTGTGTAG 1248 0.4183 MTDACKKSSVLGQSYSSLYVNPLTELRHSRSCSDSDSLACKCQKCEDFSLREVSTDNKENVTPKKKDVTRFCDKENAVPANGSSSLPKHFSKSKSLSTDRISKPNSLQFCMQMNEPEKAFGCKIWDNVYSENLSSLKIWDFSDSEAAPSSSWSTLPNKSLICRPLPIDIGMCTCIIVKEAKPEGLSGGTVYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANVLGSKYQIWDQGYRHNLLDKQLKPPLAVVMFVPTAATCTGSYRSMRAYVPKHQSMLLKNITQVQHIKGLPRDWEGKLDKVHQLFSRVPLYNKQNSKQFELDFKDKGRAELGIQRSVKNFQLTLEENGRQTILQLGRMGKSKFIMDYRYPLTGYQAFCLSLASIDTKLCCSV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00759 415 Gene3D Tubby Protein; Chain A 153 414 IPR025659 -
Accr6g00759 415 SUPERFAMILY Tubby C-terminal domain-like 149 413 IPR025659 -
Accr6g00759 415 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Accr6g00759 415 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Accr6g00759 415 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Accr6g00759 415 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Accr6g00759 415 MobiDBLite consensus disorder prediction 79 99 - -
Accr6g00759 415 Pfam Tub family 163 409 IPR000007 -
Accr6g00759 415 PANTHER TUBBY-RELATED 76 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00759 Accr-Chr6 15310039 15312817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00759 49 307 TUB Transcription Factor Family AT1G16070 55.056 1.42e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr6g00759 Tub 1.3e-37 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00759 K19600 - cave:132188154 557.755