Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00700 ATGGATGGTTGCAAAAAAACCTCCATATCGAACCAGTCATACAATTCTCTCTATGTCAATCCTCTCACTGAACTCAGGCATAGCCGAAGCTGTAGCTGTGACTATGGCCGTTTAGCTACCAAAGGTGACGACTTTGAAGGTTTCACTCACCGAGCCACGAAAATCTTGACGGATAACAAAGAGAATGTGACGCCTAACAAGAAAGAAGGTGTAGTTTCTTCTGGTGATGATGACAAGGAAAACGCAGTGCCCAAAAAGTTCTCCAATTCTAGGTCCTTGTCCACTGATAGGATCTTGAAGCCTAATTCGCTTCAGTTCTGCATGCAAATGAATGATTCTGAAAAGGCTTTTGGGTCTTCTAAGATATGGGATCGTTTTGATTTGGAGAATTCCAGTTCTACGAATGTTTGGGACTTTTCTGATTCTGAAGCAGCTCCAGCTTCATCCTGGTCAACTCTGCCAAACAAGTCTTTGATCTGTAGACCATTGCCCGTTGATGTTGGAAGATGTACATGTGTTATTGTGAAGGAAGCATCGCCAGAAGGACTATCAGGGGGCACATTGTTTTCTCTTTATACCTGTGAAGGGAAAGGAAGACAGAACAGGAAACTGGCTGTGGCTTACCATAAGAGGCGAAATGGGAGATCTCAGTTCACCATAGCTCAGAATGTAAAAGGACTTTTGTCCAATTCAGATGCTAGTTTTCTTGGAACAGTGCTAGCCAACTTCATGGGTTCAAAATACCACATATGGGATCAGGGATATCGTCATGATTACCGGGGTAAACAACCAAAACCGCCTCTTGCTGTTGTGGCATTCATACCAACTATAACAACATGTACTGGAAGTTCCAGAAGCATGAGGGCATATGTACCCAAACATCAATCTATGTCACTGAAGAACACAAGTCAGGTACAACATATCAAAGGACTGCCAACAGATTGGGAGGAAAAGCCGGACAAAGTCCATCAATTATTCTCAAGAGTTCCAATTTACAACAAGAGTTCAAAGCAGTTTGAACTTGACTTCAGAGATAAAGGAAGATCAGGACTTCAGATCCAGACATCGGTTAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAAACAATTCTGCAGTTAGGCAGGGTGGCAAAATCAAAGTTTGTTTTGGATTACAGATATCCTTTGACAGGTTACCAAGCATTCTGCATATGCTTGGCTTCCATTGATGCAAAGCTTTGCTGCACAGTTTAG 1239 0.4262 MDGCKKTSISNQSYNSLYVNPLTELRHSRSCSCDYGRLATKGDDFEGFTHRATKILTDNKENVTPNKKEGVVSSGDDDKENAVPKKFSNSRSLSTDRILKPNSLQFCMQMNDSEKAFGSSKIWDRFDLENSSSTNVWDFSDSEAAPASSWSTLPNKSLICRPLPVDVGRCTCVIVKEASPEGLSGGTLFSLYTCEGKGRQNRKLAVAYHKRRNGRSQFTIAQNVKGLLSNSDASFLGTVLANFMGSKYHIWDQGYRHDYRGKQPKPPLAVVAFIPTITTCTGSSRSMRAYVPKHQSMSLKNTSQVQHIKGLPTDWEEKPDKVHQLFSRVPIYNKSSKQFELDFRDKGRSGLQIQTSVKNFQLTLEENGRQTILQLGRVAKSKFVLDYRYPLTGYQAFCICLASIDAKLCCTV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00700 412 Pfam Tub family 161 405 IPR000007 -
Accr6g00700 412 PANTHER TUBBY-RELATED 76 409 - -
Accr6g00700 412 MobiDBLite consensus disorder prediction 62 85 - -
Accr6g00700 412 Gene3D Tubby Protein; Chain A 155 405 IPR025659 -
Accr6g00700 412 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Accr6g00700 412 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Accr6g00700 412 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Accr6g00700 412 PRINTS Tubby superfamily signature 235 259 IPR000007 -
Accr6g00700 412 SUPERFAMILY Tubby C-terminal domain-like 147 411 IPR025659 -
Accr6g00700 412 MobiDBLite consensus disorder prediction 62 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00700 Accr-Chr6 13512002 13515620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00700 58 305 TUB Transcription Factor Family AT1G16070 54.615 5.08e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr6g00700 Tub 1.8e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00700 K19600 - cave:132188154 566.229