Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00672 ATGGAGTTTCCATGGCAGAATTGGTTCTCGGATCTGGATATGGATGAGACTGGATTCTTCAATAATCAATCACAACCCAAGACTTACTCATTCGATGATGATGATAATGAGTTTCTTAAAGAGATCTTTCATCAACCTTGTTTCTCTTCTGAGAGTGACAGCACTCACTCTTCCTCTATTCAAAACAACAATGTCACCACCACCGCCGCATCATATGGTGGTGGTGGTGGTGGTTCTGCCGCTGGTACTACCCCCATCACTACCGTTAGCAGCTTACCTTTGGATATTGACTCCGGAGGCGGCACCAGCCAGCTGAAACCTAACGGCTCGGGCTCATCAATCCTCTCGATACTTGGAAGCTTCTCAGACAACAAACCTGCAATAGGCATATCGTCTCCGTCAACTTATATTCTCTCTTTTGATAACTCAACAGTTCTACGAGCCACCTCCGGCGGAGTTTACCGGAGACATGAGTCCGCCGTGAAGAGTGGTAATGAAGAGAAAATGGAGAGTAGTATGGGGGGAGGAGGCAGCTCAATGCGCGATTCTCAAAAACGTATCCTAGAAAACCATAATAGTGATAGTCATCAGCAAAAAACTAATAATCAAGGGACTAAGAGGACTAGAAATTCATCTGAGACACTGGATCACATAATGGCTGAGAGAAAAAGGAGACAAGAACTCACTGAGAAGTTTATTGCACTCTCAGCTACAATTCCTGGTTTGAAGAAGATTGACAAGGCTTCTATACTAAGCGAAGCTATAATTCACGTGAAGCAACTTCAAGAGCGTGTGAAAGAGTTAGAAGAACAGAACAAGATGAAAAATAGTACTGTGGAGTCATCTTCGTCCTACAAGATGAAGATGAAGAAGAAGACGAAGAAGTCATCATTGTTGTCGTTGAGCAATAATAATAATGATGAAGATGATCAAGAAACGACCTCTGATATTGATGACCATTACTTCAGAATTAATGAAGCAGTTCCTGAAGTTGAAGCAAGAGTTATACACAGGGAAGTTCTCATCAGAATCCACTGTGAGAACCAGAAAGGCATTATTCTTAACTTATTGGAGCAGCTACACAGTCTTCATTTCTCCATAGTCACTCATAGTGCCTTGCCATTTGGTAACTCCATTCTTGATATCACCATTATTGCTGAGGGTGATGAGGAACACAACATACCGGTGGAGGAACTTGTGAAAAAGCTGAGAATGACTCTCTTGAAGAAGAAAGTTGACTGA 1242 0.4235 MEFPWQNWFSDLDMDETGFFNNQSQPKTYSFDDDDNEFLKEIFHQPCFSSESDSTHSSSIQNNNVTTTAASYGGGGGGSAAGTTPITTVSSLPLDIDSGGGTSQLKPNGSGSSILSILGSFSDNKPAIGISSPSTYILSFDNSTVLRATSGGVYRRHESAVKSGNEEKMESSMGGGGSSMRDSQKRILENHNSDSHQQKTNNQGTKRTRNSSETLDHIMAERKRRQELTEKFIALSATIPGLKKIDKASILSEAIIHVKQLQERVKELEEQNKMKNSTVESSSSYKMKMKKKTKKSSLLSLSNNNNDEDDQETTSDIDDHYFRINEAVPEVEARVIHREVLIRIHCENQKGIILNLLEQLHSLHFSIVTHSALPFGNSILDITIIAEGDEEHNIPVEELVKKLRMTLLKKKVD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00672 413 MobiDBLite consensus disorder prediction 269 314 - -
Accr6g00672 413 MobiDBLite consensus disorder prediction 155 214 - -
Accr6g00672 413 Coils Coil 251 278 - -
Accr6g00672 413 MobiDBLite consensus disorder prediction 194 209 - -
Accr6g00672 413 SMART finulus 218 267 IPR011598 GO:0046983
Accr6g00672 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Accr6g00672 413 Pfam Helix-loop-helix DNA-binding domain 217 262 IPR011598 GO:0046983
Accr6g00672 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 279 IPR036638 GO:0046983
Accr6g00672 413 Gene3D - 210 288 IPR036638 GO:0046983
Accr6g00672 413 PANTHER BHLH TRANSCRIPTION FACTOR 44 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00672 Accr-Chr6 12938716 12942153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00672 201 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.076 5.30e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr6g00672 HLH 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00672 - - pcin:129289587 434.106