LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr6g00617	ATGTATTCTTGTAAATTGGGATCCCTTGCTCTCCTTCTTGCACTCTCTGCTTCACATCACTTCATTCTCCTTCACTGTCTAGAGCCTAGCAATGCGCCGGAGCCGAATCTGTCGGATTATGTGCCGCCATCTAATTATGGGCCGCCATCGCCTCTGCCTCCACTACCACCTACGCCTACTCCGTCATATTATGTGTCGCCATCGCCTCCGCCTCCGCTACCACCTACGCCTACCCCATCGAATTATGGGCTGCCATCACTTCCGCCTCCACCTCCGCTACCACCTATGCCTACTCCGTCACCTCAGCCTCCGCTACCACTTACGCCTCCGAACTCAGCACCTAAACCCATGACCACTCCGGAGGTCGGGGGACCAAAACCTACACCTCCTCCGAACTCAGCACCTGCCCCCACGACTGGGAAGCCTAAGACGGAGTCGGCAGTATCGATCGGACTAATTGCAGGGGCTGTGATTGGTTCGGCAGTGCTCATAGTGGGTTTATTTGGATGTTTCTTTATATGGAGAAAGAGAAGGACAAGACAATCTGCACAACCACCCAAAGCCAATGGGGAGGTTGCACCATCATCTGCTTCCGTTGGCTTGACACTAGGACCAAGAAGATTTACATATGAAGAATTAGAATCGGCAACAAATGGATTCTCGGACTCAAATTTTCTAGGCGAAGGTGGTTATGGCGTTGTCCATAAAGGAGTTCACCCTTATGATGTACTCCGACAAACTTATGTTGCCGTTAAGCAGCTAAAATATGGAATCCAAGAGGCTCGCAGAGAGTTCCTTAATGAAACCGCCATCATTAGTCGTATCCATCACAAACATCTTGTTTCCCTTGTTGGATATTGCATGGATGAAGCTCGAAGCAAGATTATGCTTGTTTATGAGTTTGTATCAAATAATAACCTAGCCTTCCACCTCCATGGCACAGAAACCATAGACTGGAAAACAAGGATGAAGATTGCTATTGGCTCTGCTAAGGGATTGGCCTATCTGCATGAAGAATGTCATCCGAAAATCATTCACCGTGACATCAAGGCATCAAATATTCTTCTCGATGATAATTTTGAGCCAAAGGTTGCAGATTTTGGGATGGCCAAATTTTCAATCGACTCCCAGGTTATGCCGACTCGGATAATGGGAAGTTTTGGATATTTAGCACCAGAATATGCAGCTAGCGGTAACCTCACAGAGAAGGCAGATGTGTTCTCCTTTGGTGTTGTGCTATTAGAGTTGATTACTGGACGAAAACCTGTTGGCGATACCAAGAAGTTTCCAAATGGCAGTTTGGTTGAGTGGGCAAGACAATTATTCTCGGAAGCTTTGGATAGCGGACACTTTGAAGGTATTGCAGATGAAAGGTTGGAGAATGATTACGACGTTGAAGAGATGTTTCGAATGATTTCTTGTGCTGCAAATTGCGTCCGCCATTCCGCCACCAATCGTCCTCCAATGACCCAGGTGGTTAAAGCTTTACAAGGAGAGATTTGGCTTGAGAATAATATGACAATGGAGAGCCCAGTGAGGCGTCAACTCAGCGAAGACATGAACAAGTTGAGGAAGATGGCAATGGGATCATTGAGCACCGCTCACTCTGATCAATTTCACTCCACCACCTCCACCTCCACTTCTAGTTCTGGCTCCAAAATATTCAGATAG	1671	0.471	MYSCKLGSLALLLALSASHHFILLHCLEPSNAPEPNLSDYVPPSNYGPPSPLPPLPPTPTPSYYVSPSPPPPLPPTPTPSNYGLPSLPPPPPLPPMPTPSPQPPLPLTPPNSAPKPMTTPEVGGPKPTPPPNSAPAPTTGKPKTESAVSIGLIAGAVIGSAVLIVGLFGCFFIWRKRRTRQSAQPPKANGEVAPSSASVGLTLGPRRFTYEELESATNGFSDSNFLGEGGYGVVHKGVHPYDVLRQTYVAVKQLKYGIQEARREFLNETAIISRIHHKHLVSLVGYCMDEARSKIMLVYEFVSNNNLAFHLHGTETIDWKTRMKIAIGSAKGLAYLHEECHPKIIHRDIKASNILLDDNFEPKVADFGMAKFSIDSQVMPTRIMGSFGYLAPEYAASGNLTEKADVFSFGVVLLELITGRKPVGDTKKFPNGSLVEWARQLFSEALDSGHFEGIADERLENDYDVEEMFRMISCAANCVRHSATNRPPMTQVVKALQGEIWLENNMTMESPVRRQLSEDMNKLRKMAMGSLSTAHSDQFHSTTSTSTSSSGSKIFR	556

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr6g00617	556	MobiDBLite	consensus disorder prediction	42	137	-	-
	Accr6g00617	556	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	344	356	IPR008271	GO:0004672\|GO:0006468
	Accr6g00617	556	MobiDBLite	consensus disorder prediction	531	556	-	-
	Accr6g00617	556	ProSitePatterns	Protein kinases ATP-binding region signature.	226	252	IPR017441	GO:0005524
	Accr6g00617	556	SMART	serkin_6	220	502	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr6g00617	556	PRINTS	Proline rich extensin signature	90	115	-	-
	Accr6g00617	556	PRINTS	Proline rich extensin signature	54	70	-	-
	Accr6g00617	556	PRINTS	Proline rich extensin signature	71	88	-	-
	Accr6g00617	556	PRINTS	Proline rich extensin signature	33	54	-	-
	Accr6g00617	556	Pfam	Protein tyrosine and serine/threonine kinase	225	495	IPR001245	GO:0004672\|GO:0006468
	Accr6g00617	556	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	196	301	-	-
	Accr6g00617	556	MobiDBLite	consensus disorder prediction	37	144	-	-
	Accr6g00617	556	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	163	534	IPR047117	-
	Accr6g00617	556	SUPERFAMILY	Protein kinase-like (PK-like)	198	496	IPR011009	-
	Accr6g00617	556	ProSiteProfiles	Protein kinase domain profile.	220	502	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr6g00617	556	CDD	STKc_IRAK	226	498	-	-
	Accr6g00617	556	Gene3D	Transferase(Phosphotransferase) domain 1	302	517	-	-
	Accr6g00617	556	FunFam	proline-rich receptor-like protein kinase PERK8	302	510	-	-
	Accr6g00617	556	Gene3D	Phosphorylase Kinase; domain 1	205	301	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr6g00617	Accr-Chr6	11939275	11945050	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr6g00617	130	492	Trihelix Transcription Factor Family	AT1G68690	49.246	1.59e-120	368

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Accr6g00617		PK_Tyr_Ser-Thr	5.4e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr6g00617	-		-	pcin:129289322	507.294