Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00579 ATGTCTAAACCATTAGAACATGATTACATAGGCTTAGCAGCAGCATCAGGGAATCCTTCCATGGAAAAACACACTGAGAAAATATCTTCTCCTTCTTCTGCTTCGTCTACTCTTTCTTCTGAGAAAGAAAATAGCTCTTCTCTTAATTTCAAAGAGACTGAGCTAAGGCTTGGGCTCCCTGGTACAGATTCTCCTCCTCTTCCTCCTTCTGAGAGGAAATCTGGAAGTGGGATTTCTCTTTTCGGCAAGGATTTGCAGAGTAGCCACAATAGTACTGATACTAATGCTAATAATGGGTTCTCTTCTTCTTCCCCTTTGAAGAACACCAACGTGGTTAGAGCTAAGAGGGTTTTTTCTGACGCCATTGATGGGTCTTCCGGGAAATGGGGTTTCTCTGTGAGTGACAAGAAAATTGGGTCTGAAGCTGATTTTGGAAAAGGAGCTTCTTTTGTGAAGCCTCCTCTTGTTGCTGCAGAAGCTTCTGCTAACTATGAACAAAAGAGCATTAAAGATGGTGGAATAGTTCAAGAGAAGAAGAAACCTCAGGTTTCTTCTGTTGCTGCTACTAATGAACATGGAAGTACTCCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTAGATCTTTTCGAAAGAACAGCATGGCCTCTAATTCGACGAAGAACAATGATGAAGGTGAAGGTGGTAAAGCAGGATATGGCTGTCTCTATGTGAAAGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTTCAGCAACTATGTGGATCTTTCTTCAGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTTGCTGTGAAAGATGGCCTGAGTGAGAGCTCTCTGAGGGATCTTCTCCATGGTTCTGAATATGTTCTTACTTATGAAGATAAAGATGGAGACTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCATGTAAGAGATTAAGGATCATGAAAGGTTCTGAGGCGATCGGGCTCGCTCCCAGGGTGGTGGAAAAATCCAGGAGCCAAAACTAA 1074 0.4367 MSKPLEHDYIGLAAASGNPSMEKHTEKISSPSSASSTLSSEKENSSSLNFKETELRLGLPGTDSPPLPPSERKSGSGISLFGKDLQSSHNSTDTNANNGFSSSSPLKNTNVVRAKRVFSDAIDGSSGKWGFSVSDKKIGSEADFGKGASFVKPPLVAAEASANYEQKSIKDGGIVQEKKKPQVSSVAATNEHGSTPPAAKAQVVGWPPIRSFRKNSMASNSTKNNDEGEGGKAGYGCLYVKVSMDGAPYLRKVDLKTFSNYVDLSSALEKMFSCFTIGQCSSGGLAVKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKGSEAIGLAPRVVEKSRSQN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00579 357 Pfam AUX/IAA family 52 348 IPR033389 -
Accr6g00579 357 ProSiteProfiles PB1 domain profile. 237 339 IPR000270 GO:0005515
Accr6g00579 357 MobiDBLite consensus disorder prediction 182 196 - -
Accr6g00579 357 MobiDBLite consensus disorder prediction 1 107 - -
Accr6g00579 357 MobiDBLite consensus disorder prediction 80 107 - -
Accr6g00579 357 FunFam Auxin-responsive protein 232 349 - -
Accr6g00579 357 SUPERFAMILY CAD & PB1 domains 237 338 - -
Accr6g00579 357 Gene3D - 232 351 - -
Accr6g00579 357 MobiDBLite consensus disorder prediction 172 200 - -
Accr6g00579 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 47 344 IPR003311 GO:0005634|GO:0006355
Accr6g00579 357 MobiDBLite consensus disorder prediction 22 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00579 Accr-Chr6 11511877 11514415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00579 240 342 B3 DNA Binding Superfamily AT2G46530 33.010 5.50e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr6g00579 AUX_IAA 2.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00579 K14484 - qsa:O6P43_018182 417.542