Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00564 ATGGAAGTGCCTCAATACTTTGTCGGTGCTTACTTCGGCTCCGGCGGAGGCGACCATTTCTCTCCGGAAAAGCGCCATTCCGACCAGAAGCCCACCACTGAGCCTTTTGCCGTCGACGACCTCCTCGACTTCTCTCATGCCGACGCTATCATGTCCGATGCTGCTTTCATTGATAATGTCGCCGGAAATTCTACCGACTCCTCCACCGGCACTGCTGTTAATAGCTGCAACACCTCAATTTCCCGTGTCGATAATAACCGTTTCTCAACCAACTTTGCTCCTCGTCCCTTCGGCGATCATCAGTTACCCGGTGAACTCTGTGTGCCGTATGATGACATGGCGGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCGTTCACCGCACAAGACGAGCTGAAAACACTCCACCTTCTATCCGGCGCCACTACCGCTTCCGCATTTGGCGCCAAACCTCAGACTCCAGACTCTTCCTCTTCTTCTGAAACCCTCCCACCTTTCGCTCCTGATGCAGCTCGCAACGCCCCGTTTTTCCACCCAGAAACTCCTTTACCAGGCAAAGCTCGGAGCAAGCGTTCACGCGCCGCTACTGGCGATTGGTCAACGCGCTTCCTCCATCTCGTAACAGCACCACCCCACAACCACTCGACCACGACGGAGGCCAAACCAGTGCAAGGTAAGGCGACGACAGTGAAGAAGAGGGAGAGCTCAAATTCCAATTCCGATTCCTCAGGTCGGAAATGCCTGCACTGTGCCACCGAGAAGACGCCGCAATGGCGCACTGGCCCGTTGGGTCCGAAGACTCTGTGCAATGCTTGTGGAGTCCGGTACAAGTCCGGGAGGCTGGTACCGGAGTACCGGCCGGCGGCAAGCCCGACGTTTGTGTCTACGAAGCACTCGAATTCTCATAGGAAGGTCTTGGAGCTGAGGAGGCAGAGGGATCTGCAAACGCAGCAGCAGCAGCAGCAACTGATTAGTCAAGCTTCCATTTTTGGCGTATCCAACGGCGGAGATGAGTTCTTGATCCATCACCATGGTGGTCCTGACTATAGGCATATCATGTAG 1065 0.5493 MEVPQYFVGAYFGSGGGDHFSPEKRHSDQKPTTEPFAVDDLLDFSHADAIMSDAAFIDNVAGNSTDSSTGTAVNSCNTSISRVDNNRFSTNFAPRPFGDHQLPGELCVPYDDMAELEWLSNFVEDSFTAQDELKTLHLLSGATTASAFGAKPQTPDSSSSSETLPPFAPDAARNAPFFHPETPLPGKARSKRSRAATGDWSTRFLHLVTAPPHNHSTTTEAKPVQGKATTVKKRESSNSNSDSSGRKCLHCATEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQRDLQTQQQQQQLISQASIFGVSNGGDEFLIHHHGGPDYRHIM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00564 354 CDD ZnF_GATA 247 294 IPR000679 GO:0006355|GO:0043565
Accr6g00564 354 SMART GATA_3 242 292 IPR000679 GO:0006355|GO:0043565
Accr6g00564 354 MobiDBLite consensus disorder prediction 147 196 - -
Accr6g00564 354 FunFam GATA transcription factor 237 324 - -
Accr6g00564 354 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Accr6g00564 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 305 - -
Accr6g00564 354 Gene3D - 243 327 IPR013088 GO:0006355|GO:0008270
Accr6g00564 354 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Accr6g00564 354 PANTHER GATA TRANSCRIPTION FACTOR 29 322 - -
Accr6g00564 354 MobiDBLite consensus disorder prediction 211 248 - -
Accr6g00564 354 MobiDBLite consensus disorder prediction 147 165 - -
Accr6g00564 354 PIRSF Txn_fac_GATA_plant 21 336 IPR016679 GO:0003677|GO:0005634|GO:0045893
Accr6g00564 354 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
Accr6g00564 354 MobiDBLite consensus disorder prediction 211 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00564 Accr-Chr6 11098704 11100000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00564 34 354 C2C2-Gata Transcription Factor Family AT4G32890 43.425 1.09e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr6g00564 GATA 4.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00564 - - gmx:100776605 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00564 6 11098704 11100000 Accr6g00564 6 11098704 11100000 ECH