Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00544 ATGAACTTTGTACGAAACCCCCATTTTAAGGTTCTTTACTTTCTTCTCTTTCTGCTTCACCTTTACTCACTGTGTTCCTACCCGACCCCCATGGGCTGTACGGATACGAGCCGGTTGTGCACTTCATTCTTGGCCTTCAAACCTCAACCAAACCAGACGCTAGCAGTTATACAGAGTATGTTCGATGTACTGCCCGGAGATATCACCGTGGAAGGCAATGGCTGGGATTATGTGTTCATCAGGAAGAACTGTTCATGCGCTTATGGTATAAAGAAATATGTGTCCAACACTACTTTCACAGTGAAATCTAATGAAGGGATTGTGCATGATTTGGTGATGGATGCCTATGATGGCCTTGCTATCTTGCCCAACACCACCAGGAGGGCCAAAAACGGCGCTGTCATATCGCTGAGGTTGTTTTGTGGGTGTTCTAGTGGCTTGTGGAACTATTTGTTGAGTTATGTCATGAGAGATGGTGATAGTGTTGAATCTCTGGCGAGTCGGTTTGGGGTTAGTATGGATGCTATAGAGACGGTGAATGGTATTACTAATCCAGATAATGTCACTGTGGGATCTCTTTATTATATACCTCTGGATTCAGCTCCTGGCGATCCATATCCTTTGAAGAATGATACTCCTCCAGCACCTGTTCCTGCCCCATCTGCTGACAATTTTTTAGCTAATCAAGTCGATAATAAGGCTCATGTGCCATACAAATGGATCCTTGGTGGTTTAGGGGTTGTTCTTGCTCTCATCATACTAAGCATAATTCTCTGTGTTTCCCTGCGATCCTCACATTGTTTCAATCAAGCCAGAAGCCATGGAAAAGATACTGAGCCCAAGACCTTTCATAAGTTTCATATTCTTCGAAGTTCAAGTTTTTGTTGTGTTTCAGGAAGGTACATCAGTGAAAAGTCTGTAGACCAGAAGCAAACTGACGGTGAACCTAGCAACGTCCAGATTACCATTCCCAAAGTTCCAGCTCTAGGGACTGATGTATTTGACACGGATAAGCCTGTTGTTTTCACATATGAAGAGATTTTCTCATCAACTGATTGCTTCTCTGATTCAAATCTACTTGGCCATGGTACATATGGTTCTGTTTATTATGGCTTGCTCCGTGACCAGGAAGTTGCTATAAAAAGAATGACAGCTACAAAAACTAAAGAATTTATGTCTGAGATGAAAGTCTTGTGCAGGGTTCATCATACAAATCTGGTAGAATTGATCGGCTATGCTACTACACATGATGAACTTTTCCTTATTTATGAATATGCACTGAAGGGATCACTCAAAAGCCATTTACATGATCCTCAGAATAAGGGTCATTCCTCTCTTTCTTGGATCATGAGGGTCCAGATAGCACTTGATGCTGCTAGGGGCCTTGAATATATACATGAGCACACCAAAACCCATTACATCCACCGAGATATCAAAACAAGCAACATTTTACTAGATGCTTCCTTTAGAGCAAAGATCTCAGATTTTGGGTTAGCAAAACTCGTTGGGACAGCAAATGAGGGAGAAATTGCTACCACTAGAGTTATTGGTACATATGGTTATCTTGCTCCAGAGTACTTGAGTGATGGTCTTGCGACAACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTCTTTGAGATTATATCTGGGAAGGAGGCTATCATTCGAACAGAAGGCACAATGACCAAAAACCCAGAAAGACGTTCATTGGCATCTATTATGCTGGCAGCTCTTAGGAACACACCCGATTCGTTGAGCATGTCAAACATGAGAGATTATATTGATCCCAACATGATGGATCTTTATCCACATGATTGTGTATTCAAGATGGCGATACTGGCTAAGCAATGTGTGGACGACGATCCCATCGTACGACCTGACATGAAACAAGTTGTGATTTCTCTCTCACAGATTCTCTTGTCTTCTATTGAGTGGGAAGCAACTCTTGCTGGGAACAGTCAGGTTTTCAGTGGGCTTGTCCAGGGAAGATAG 1995 0.4241 MNFVRNPHFKVLYFLLFLLHLYSLCSYPTPMGCTDTSRLCTSFLAFKPQPNQTLAVIQSMFDVLPGDITVEGNGWDYVFIRKNCSCAYGIKKYVSNTTFTVKSNEGIVHDLVMDAYDGLAILPNTTRRAKNGAVISLRLFCGCSSGLWNYLLSYVMRDGDSVESLASRFGVSMDAIETVNGITNPDNVTVGSLYYIPLDSAPGDPYPLKNDTPPAPVPAPSADNFLANQVDNKAHVPYKWILGGLGVVLALIILSIILCVSLRSSHCFNQARSHGKDTEPKTFHKFHILRSSSFCCVSGRYISEKSVDQKQTDGEPSNVQITIPKVPALGTDVFDTDKPVVFTYEEIFSSTDCFSDSNLLGHGTYGSVYYGLLRDQEVAIKRMTATKTKEFMSEMKVLCRVHHTNLVELIGYATTHDELFLIYEYALKGSLKSHLHDPQNKGHSSLSWIMRVQIALDAARGLEYIHEHTKTHYIHRDIKTSNILLDASFRAKISDFGLAKLVGTANEGEIATTRVIGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKEAIIRTEGTMTKNPERRSLASIMLAALRNTPDSLSMSNMRDYIDPNMMDLYPHDCVFKMAILAKQCVDDDPIVRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00544 664 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Accr6g00544 664 Gene3D Transferase(Phosphotransferase) domain 1 427 650 - -
Accr6g00544 664 Gene3D LysM domain 149 204 IPR036779 -
Accr6g00544 664 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Accr6g00544 664 Pfam Protein tyrosine and serine/threonine kinase 358 634 IPR001245 GO:0004672|GO:0006468
Accr6g00544 664 FunFam Kinase family protein 328 425 - -
Accr6g00544 664 SMART LysM_2 153 197 IPR018392 -
Accr6g00544 664 SUPERFAMILY Protein kinase-like (PK-like) 335 636 IPR011009 -
Accr6g00544 664 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 76 658 IPR044812 GO:0019199|GO:0045087
Accr6g00544 664 Gene3D Phosphorylase Kinase; domain 1 329 425 - -
Accr6g00544 664 Pfam LysM domain 154 191 IPR018392 -
Accr6g00544 664 ProSiteProfiles Protein kinase domain profile. 354 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr6g00544 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Accr6g00544 664 FunFam PTI1-like tyrosine-protein kinase 3 426 650 - -
Accr6g00544 664 SUPERFAMILY LysM domain 153 197 IPR036779 -
Accr6g00544 664 SMART serkin_6 354 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00544 Accr-Chr6 10725534 10731792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00544 30 664 Receptor kinase-like Gene Family AT1G51940 68.118 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Accr6g00544 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00544 - - pcin:129289327 1202.58