Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00543 ATGGATGTGAGGTCAAGAAATGAGGAGGTTTCTCCTCAGCTGCTAGATTTGATCCCAAAGGCTAAAAAAGAATGGCGTATGAACGAAGAAGGAAGAACCCAAAACAACAAAAACACCAAGAAGGACAAGTCTTGTTGTGAGGAGAGAAAACTTGAGCTTAGACTTGGTCCACCTGGTGGTGAAGACTGGTTTCTCCCTCATAATCACAACACCAAAAACAGTGATGAGTCTGTACTTTATCTTGGTTACTTCCCTTCTCAGCAAACCGAGAAAATCTCTACCTCTCCATGGGCTTGTTCTTCTTCTTCTAAGGCTTCTTCATTTCTTCAGTTCCCTTCATGTAGCCCTCAGAGCATGCCTGAGAAGAAAGCTTTCTCATCATCCTCTTCTGCTAATCCAGCTGTTTCCTCTAATATTTCTCAGAAAAGAACTGCTCCTGGCCCAGTAGTGGGTTGGCCTCCAATTCGTTCGTTTAGGAAGAACCTTGCAAGCAACGGCATTTCTAAGACAGCTCATGAGACACAACAGCAGCAGAATGATGTTGCAGACAAGGTTGCTGGGAAGAAACCTGTTGTAGACAACGTTGGTAAAGGTTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATAGGTAGAAAAGTTGACCTTAATGCTTATGACAGCTATGAAAAACTCTCCTCTGCCGTCGATGAACTCTTCAGATGTCTCCTTGCTGCTCAAAGAGATTCCTCTGCTGGAGGAATCAAGAACAAGGAAGAAGATGAAGAAAAAGCTATTACAGGTTTATTGGATGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTCGTCGGGGACGTGCCATGGCACATGTTTGTATCAACTGTGAAGAGGCTGCGTGTGCTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTAACAAGCAACACAAGAAAGCCACTTGA 963 0.4372 MDVRSRNEEVSPQLLDLIPKAKKEWRMNEEGRTQNNKNTKKDKSCCEERKLELRLGPPGGEDWFLPHNHNTKNSDESVLYLGYFPSQQTEKISTSPWACSSSSKASSFLQFPSCSPQSMPEKKAFSSSSSANPAVSSNISQKRTAPGPVVGWPPIRSFRKNLASNGISKTAHETQQQQNDVADKVAGKKPVVDNVGKGLFVKINMDGVPIGRKVDLNAYDSYEKLSSAVDELFRCLLAAQRDSSAGGIKNKEEDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGNKQHKKAT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00543 320 MobiDBLite consensus disorder prediction 119 146 - -
Accr6g00543 320 ProSiteProfiles PB1 domain profile. 198 303 IPR000270 GO:0005515
Accr6g00543 320 MobiDBLite consensus disorder prediction 19 56 - -
Accr6g00543 320 SUPERFAMILY CAD & PB1 domains 194 300 - -
Accr6g00543 320 Gene3D - 193 315 - -
Accr6g00543 320 FunFam Auxin-responsive protein 193 315 - -
Accr6g00543 320 MobiDBLite consensus disorder prediction 119 144 - -
Accr6g00543 320 MobiDBLite consensus disorder prediction 1 60 - -
Accr6g00543 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 306 IPR003311 GO:0005634|GO:0006355
Accr6g00543 320 Pfam AUX/IAA family 51 308 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00543 Accr-Chr6 10678937 10681689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00543 202 314 B3 DNA Binding Superfamily AT4G23980 34.513 1.22e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr6g00543 AUX_IAA 1.7e-72 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00543 6 10678937 10681689 Accr6g00543 6 10678937 10681689 ECH