Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00514 ATGGCTCAACAAGAAGACAAACGTCATGCTTCTGTTGAGGAAGGGAAGAAGAGTAAGAGGAAAAGGAATAGACCCCGGAAATCTGCAACTGAGGAGCAATTGGAACCTCAAGAGTCAAACCAGCATGGGGAGGAAGAAGGTGAAGAAGCCAGAGAGAATGATGGGGATAAGGACTTTGCTGAGTTGCGTAAGAAAAAGAAGGATAAAAAGATGAAACGCGGTGAAGAATTGACATTAGCGGAAATGAGCGGCGATGAGGATGAGCAGGAGGGCGAACAAAGGAGGTCAAAGAATGTTGGGTCTGGAATTATGAGCACGGTGTCGTTTGACTCCCTGGGATTGTCTGAACCAACTTTTAAGGCCATTAAGGATATGGGATTCGAGCATACTACTCAGATTCAAGCGAGAGCAATCCCGCCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGGAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGATGTTGTACCATGCTCAATTCACTCCGCGAAATGGAGCTGGTGTTGTTGTCATTTGCCCTACTAGGGAGCTTGCAATACAGACGCATGCTGTAGCAAAAGAACTTCTCAAATACCACTCCCAGACTCTTGCATTGGTTATTGGTGGTTCAGCTAGAAAAGGAGAAGCTGACCGGATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGGCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATACAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCTAAGAATCGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAAAAGGTCGAAGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACTAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCGAAAAAAAAGATGATGCAGACACGTACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATTTTGCTCTGCACTGATGTTGCTGCCCGTGGACTTGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCTAAGGAATATATCCACAGGGTTGGTCGAACAGCGCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCGAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGTTGGCAAATGTACAGTCTCACCTGGAAAAGTTGGTGGGCAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTGGCGGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCGTAGACAGCGGGGCTTCAAAGCATAGGAAGAAAATGCGTAAGGTTGAAGGGAGCAGACATGGATTCAGCGATAGCAATCCTTATGGTAACAAAATTGCTGCTGATGATAACCGCCAATTTGTGAGGCATTAG 1695 0.4354 MAQQEDKRHASVEEGKKSKRKRNRPRKSATEEQLEPQESNQHGEEEGEEARENDGDKDFAELRKKKKDKKMKRGEELTLAEMSGDEDEQEGEQRRSKNVGSGIMSTVSFDSLGLSEPTFKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVEMLYHAQFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEADRIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLANVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGVDSGASKHRKKMRKVEGSRHGFSDSNPYGNKIAADDNRQFVRH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00514 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Accr6g00514 564 Gene3D - 83 319 IPR027417 -
Accr6g00514 564 Pfam DEAD/DEAH box helicase 131 302 IPR011545 GO:0003676|GO:0005524
Accr6g00514 564 SMART DUF4217_3 457 520 IPR025313 -
Accr6g00514 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 458 IPR027417 -
Accr6g00514 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 314 IPR027417 -
Accr6g00514 564 MobiDBLite consensus disorder prediction 25 80 - -
Accr6g00514 564 SMART ultradead3 126 331 IPR014001 -
Accr6g00514 564 Pfam Helicase conserved C-terminal domain 357 416 IPR001650 -
Accr6g00514 564 PANTHER RNA HELICASE 51 463 - -
Accr6g00514 564 CDD SF2_C_DEAD 328 427 - -
Accr6g00514 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Accr6g00514 564 MobiDBLite consensus disorder prediction 523 557 - -
Accr6g00514 564 CDD DEADc_DDX18 118 315 IPR044773 GO:0003724|GO:0005524
Accr6g00514 564 MobiDBLite consensus disorder prediction 1 102 - -
Accr6g00514 564 SMART helicmild6 342 417 IPR001650 -
Accr6g00514 564 Pfam Domain of unknown function (DUF4217) 458 518 IPR025313 -
Accr6g00514 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 466 IPR001650 -
Accr6g00514 564 MobiDBLite consensus disorder prediction 1 18 - -
Accr6g00514 564 Gene3D - 320 479 IPR027417 -
Accr6g00514 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00514 Accr-Chr6 10162404 10167430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00514 108 435 Eukaryotic Initiation Factors Gene Family AT3G13920 28.889 3.42e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00514 K13179 - zju:107418893 830.091