LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr6g00483	ATGGGAATGTCAAAGAGCTTCTTCTGCTTCTCTTTTCTTGTAGGTTGTCTGGTTTTTGCAGTTCTGGTTCAATCTCAGGATCAATCAGGATTCATAAGCATAGATTGTGGGGCACCTGCCAAGTCTGCCTACACTGAGGAGACAACAGGCATACAATACATATCAGATGAAAAGTTCATAAATTCTGGAGTGGGAAACTCCATAACCAGTGAGCTTCAAAATAAGTATAAAAGGCAAGTTTGGACCCTGAGAAGCTTTCCTCAAGGCACAAGAAACTGTTACAGAATAAACATCACAAGTGGCTCTAAATATCTGATCAGGGCTAATTTTGTGTATGGGAATTATGACGGCCCGAATCGGTTACCAAAGTTTGATCTTCATCTTGGGCCTAACTTGTGGCAAACAGTGAAAATAACCAATCCATCAGGGGAAGTAGACCCTGAGATCATACATGTTCCATCTCTAGATCACATTCAAATCTGTCTGGTTGACACAGGCTCTGGAACCCCATTTATTTCTGCTATAGATTTAAGGACTTTGATGAATGATACTTATGTTACTCAGTTTGGATCCTTGTCACTTCACTCGAGGTTGGATTTAGGCTCAACCAGCAAGAAAACATACAGGTATAGTGATGATGATTATGATCGCTCCTGGTCAGCTCCTGCCTACAATCCGAACTGGGCGCAAATAAATGCTTCAATTTCTTCAGATTCCTTGGCTCAAAATGTCTACAAACCAGCAGCCATTGTTATGAGTACTGCAGCCACACCAGTAAATGAAATTGCTCCAATGGAAGTGTCGTGGGCGCCAGAAAATGCATCAGACCAATTCTATGTTTACATGCATTTTGCTGAGCTTCGAGTGTTAGAAAAGAATCAGACAAGATCATTCGACATTACTGTCAATGGCGATCTCTTCTATGCTGATGTTGTACCCAAGTACCGAAGCACCAACACTGTATTCAGCAAAAAAGCCACTAGTGGAGAAAAAATTAGTTTTTTACTTCAGAGGACTCATAAGTCAACCCTCCCTCCCATTCTCAATGCTATTGAAGTTTATACAATCAAAGACTTTTCGCAATCAGAGACAGAACAAGGAGATGTTGATGCGATCACAACAATCAAGTTTTCTTTTGGGGTGACAAGAAATTGGCAGGGTGATCCATGTGGTCCTCTGAACTACATATGGGAAGGTCTAAATTGTACTTATAATGGCCAGAATTCCCCAAGAATCACAGCCCTGAATTTATCTTCGAGTGGATTGACAGGACAGATAGATCCTTCCATCACAAAGCTCACCATGTTGGAGAAGTTGGATTTATCAAACAATAGCTTAAATGGACCAGTTCCTGATTTTCTTTCTCAACTACAAAACCTGAAGATCTTAAACCTTCAAAACAACAACTTCATAGGTGCACTTCCCACTGATCTGGTTGAAAAATCAAAGAAAGGTTCCCTATTACTAAGTGTTGGACAAAATCCATATCTATGTGAATCTCCTCCATGCAACAAGAAGAAAAAGAACAATATTATTATTCCCGTAGTAGCATCAGTCGGTGGAGTTCTGATCCTTGTGGTAGCCACAGCAACTTTATTTTTAACCCTTAAAAGGAGAAAACCAAGAGGTCCACTTGAGACATCACAGCGAGTTGAAAAAATTGAAGAAAAAGACACGTCTCTGCAAGTCATAAATAGACAATATTCATACTCTGATGTCCTCAATATGACCAATAACTTCAATACAATCCTCGGAAAAGGTGGGTTTGGAACAGTTTATTTGGGTTACATCGAGGAAACTCCTGTGGCAGTTAAAATGCTCTCTCTGTCATCAGCTCAAGGTTATCAACAATTCCAAGCCGAGGTTAAACTTTTAATGAGAGTTCATCATAAAAATCTTACTTCCCTTACTGGATATTGCAATGAAGAAACCAATATGGGGCTCATATATGAGTACATGGCTAAGGGCAACCTACAAGATTACCTTTCAGGAAATGGCAGCAGATCAAAGTTCCTGACATGGGAAGACAGACTTTGGATAGCATTGGATGCAGCACAAGGGTTGGAGTATCTGCATAATGGATGTAAGCCACCTATAATCCACAGAGATGTAAAATCTTCAAACATCTTGCTGAATGAAAACTTCAGAGCAAAAGTAGCTGACTTTGGTCTATCTAAAATCATCCCAACTGATGATGGAACTCATGTGTCAACTGTTGTTGTTGGTACTCCTGGCTATATAGACCCTGAGTATTCTATAACAAATAGATTGACGGAGAAAAGCGATGTTTTTAGCTTTGGAGCAGTTCTTTTCGAGATAATCACAAGTCTACCAGTCATATTAAGAACCCATGAGAAAATTCACATAAGTGATTGGGTTAACTCCCTGGTTGCTAAAGGGAATATCAGGGCCATTGTTGACCCAAGGTTAAACGGAGACTTTGATAGTAGCTCTGCTTGGAGAGCTGTGGAAATGGCAACGACTTGTGTGTCAAGTAACCCCAACGGCAGGCCAACCATGAGTGAGGTGGTGAATGAGCTAAAGGAGTGTTTGGCAATAGAAGTAGCGAGAACCAAAAACAATGGTGCTGATACAGGAGAAGCAGTTGAATTAGTGTCCCTGAATATGACAAGCACAGAATACTCACCCTTGGCCAGGTAG	2661	0.4062	MGMSKSFFCFSFLVGCLVFAVLVQSQDQSGFISIDCGAPAKSAYTEETTGIQYISDEKFINSGVGNSITSELQNKYKRQVWTLRSFPQGTRNCYRINITSGSKYLIRANFVYGNYDGPNRLPKFDLHLGPNLWQTVKITNPSGEVDPEIIHVPSLDHIQICLVDTGSGTPFISAIDLRTLMNDTYVTQFGSLSLHSRLDLGSTSKKTYRYSDDDYDRSWSAPAYNPNWAQINASISSDSLAQNVYKPAAIVMSTAATPVNEIAPMEVSWAPENASDQFYVYMHFAELRVLEKNQTRSFDITVNGDLFYADVVPKYRSTNTVFSKKATSGEKISFLLQRTHKSTLPPILNAIEVYTIKDFSQSETEQGDVDAITTIKFSFGVTRNWQGDPCGPLNYIWEGLNCTYNGQNSPRITALNLSSSGLTGQIDPSITKLTMLEKLDLSNNSLNGPVPDFLSQLQNLKILNLQNNNFIGALPTDLVEKSKKGSLLLSVGQNPYLCESPPCNKKKKNNIIIPVVASVGGVLILVVATATLFLTLKRRKPRGPLETSQRVEKIEEKDTSLQVINRQYSYSDVLNMTNNFNTILGKGGFGTVYLGYIEETPVAVKMLSLSSAQGYQQFQAEVKLLMRVHHKNLTSLTGYCNEETNMGLIYEYMAKGNLQDYLSGNGSRSKFLTWEDRLWIALDAAQGLEYLHNGCKPPIIHRDVKSSNILLNENFRAKVADFGLSKIIPTDDGTHVSTVVVGTPGYIDPEYSITNRLTEKSDVFSFGAVLFEIITSLPVILRTHEKIHISDWVNSLVAKGNIRAIVDPRLNGDFDSSSAWRAVEMATTCVSSNPNGRPTMSEVVNELKECLAIEVARTKNNGADTGEAVELVSLNMTSTEYSPLAR	886

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr6g00483	886	SMART	serkin_6	578	851	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr6g00483	886	ProSitePatterns	Protein kinases ATP-binding region signature.	584	605	IPR017441	GO:0005524
	Accr6g00483	886	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	699	711	IPR008271	GO:0004672\|GO:0006468
	Accr6g00483	886	Pfam	Protein tyrosine and serine/threonine kinase	580	847	IPR001245	GO:0004672\|GO:0006468
	Accr6g00483	886	PANTHER	OS07G0107800 PROTEIN-RELATED	32	851	-	-
	Accr6g00483	886	Gene3D	-	195	357	-	-
	Accr6g00483	886	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	16	-	-
	Accr6g00483	886	SUPERFAMILY	Protein kinase-like (PK-like)	563	847	IPR011009	-
	Accr6g00483	886	Pfam	Malectin-like domain	34	356	IPR024788	-
	Accr6g00483	886	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	653	860	-	-
	Accr6g00483	886	Gene3D	Phosphorylase Kinase; domain 1	565	652	-	-
	Accr6g00483	886	SUPERFAMILY	L domain-like	384	478	-	-
	Accr6g00483	886	Pfam	Leucine rich repeat	410	470	IPR001611	GO:0005515
	Accr6g00483	886	CDD	STKc_IRAK	584	849	-	-
	Accr6g00483	886	Gene3D	Transferase(Phosphotransferase) domain 1	653	870	-	-
	Accr6g00483	886	FunFam	Leucine-rich repeat receptor-like kinase	368	500	-	-
	Accr6g00483	886	Gene3D	Ribonuclease Inhibitor	370	487	IPR032675	-
	Accr6g00483	886	ProSiteProfiles	Protein kinase domain profile.	578	851	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr6g00483	886	FunFam	Leucine-rich repeat receptor-like protein kinase	550	652	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr6g00483	Accr-Chr6	9678293	9683274	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr6g00483	7	886	Receptor kinase-like Gene Family	AT2G19210	48.721	0.0	841

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Accr6g00483		Malectin_like	3.1e-115	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr6g00483	-		-	gmx:100785345	1107.05