Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00455 ATGTCTAATTTGATGAATTGTTCTTCATCAGCTGAAGCTAATTTTTCAATTTATCCTCCTCCTCATCAACAACAACAATACTTGTCTTCTTCTTCTTCGTCTCAATCTCATCAGCCAGCGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAAGCACAAGTGATTGCCTTGTCTCCAAACACTCTTTTAGCAACAAACAGGTTCATATGCGAGATCTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTACATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACGAGCAAAGAGATAATAAGGAAGAAGGTGTATGTGTGTCCAGAACCAACGTGCGTTCACCATGACCCTTTAAGAGCACTTGGAGACCTAACAGGGATCAAGAAGCACTTTCGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAGGTACGCTGTTCAATCTGATTGGAAGGCTCACTCCAAAACCTGCGGCACAAGAGAGTACAAATGTGACTGTGGCGTTCTCTTCTCTAGGAGGGACAGTTTCATAACTCACAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGATCATCATCATCAGGAAACCACCAAGTTCTTGTTCCCTCATCACAACCACCCCTAAACAATTCTTATACTAATAATAATCTCCAAACCCGGTTCTTGAAAAACGAGGTCACTCTCACTTCTAGTTCTTCTTCTTCTTCTAGTCTCATCAGGCAAGGCATTCAGATTCCCTCTTGGCTTGGTGGGCCCCCCACTAATTCTCAGCTTCATCATCTTCTTAGCCATGAAAGTCCAAACACTAACCCTAGTAGCCTGGGCCCTACCACCACCACCACCACCACTAGTTTTCTTCCAGGTCCAGCTCCTTATTCTTCCCACATGTCAGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATCGGTTCAACCCTCAGCAAAACCGGTTCACCCATCCTCAGGACCCACACCAACCCTACCCATCACGTGTCTGCTGCTTTGAATCCTCAAGGTCACGTGAGCATCACGACCACCCATGGCTTCTTGTCTCCTTCCTCTTCTTCTACTTCTGATTTCGACGAGGCTTTGATTATTAATGGTGGGATTTTGAATAATCCCTTCAAGAAAGATGCCGACAACTTGCACCGCGGCCACAGTGATCTTTTCAGAGCAACCGACTCCGGCAGTGGCAGCAGGAGAACAGGCAGCGGCGGCGTTGGGAACGTGGAGGGTTTGACGAGAGATTTCTTGGGTCTTAAACCTCTTTCCCATAATGAGATTCTCACCATGGCTGGTTTTGGAAACTGCATGAGCTCCTCTACTTCTTCCTCCCACCATGATCAACCAATTCGTCAATTCCAATGGCAAGCTTAA 1416 0.4668 MSNLMNCSSSAEANFSIYPPPHQQQQYLSSSSSSQSHQPAKKKRNLPGNPDPEAQVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIIRKKVYVCPEPTCVHHDPLRALGDLTGIKKHFRRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGVLFSRRDSFITHRAFCDALAEESARSSSSGNHQVLVPSSQPPLNNSYTNNNLQTRFLKNEVTLTSSSSSSSSLIRQGIQIPSWLGGPPTNSQLHHLLSHESPNTNPSSLGPTTTTTTTSFLPGPAPYSSHMSATALLQKAAQIGSTLSKTGSPILRTHTNPTHHVSAALNPQGHVSITTTHGFLSPSSSSTSDFDEALIINGGILNNPFKKDADNLHRGHSDLFRATDSGSGSRRTGSGGVGNVEGLTRDFLGLKPLSHNEILTMAGFGNCMSSSTSSSHHDQPIRQFQWQA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00455 471 Gene3D Classic Zinc Finger 127 205 - -
Accr6g00455 471 MobiDBLite consensus disorder prediction 268 305 - -
Accr6g00455 471 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Accr6g00455 471 MobiDBLite consensus disorder prediction 403 422 - -
Accr6g00455 471 FunFam protein indeterminate-domain 12-like 49 118 - -
Accr6g00455 471 Gene3D Classic Zinc Finger 49 116 - -
Accr6g00455 471 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Accr6g00455 471 MobiDBLite consensus disorder prediction 15 42 - -
Accr6g00455 471 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Accr6g00455 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Accr6g00455 471 MobiDBLite consensus disorder prediction 452 471 - -
Accr6g00455 471 SMART c2h2final6 147 167 IPR013087 -
Accr6g00455 471 SMART c2h2final6 70 92 IPR013087 -
Accr6g00455 471 SMART c2h2final6 112 142 IPR013087 -
Accr6g00455 471 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 452 IPR031140 -
Accr6g00455 471 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Accr6g00455 471 MobiDBLite consensus disorder prediction 206 229 - -
Accr6g00455 471 MobiDBLite consensus disorder prediction 15 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00455 Accr-Chr6 9241995 9244736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00455 22 456 IDZ Gene Family AT1G55110 48.989 6.31e-123 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr6g00455 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00455 K25870 - gmx:100819692 424.861