Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00454 ATGTTCGAGAAAAAGATAGATGTTGTGTTGGATCCATGTTCCACCTTCATCAACAGAAATATGTCTAATTTGATGAATTGTTCTTCATCAGCTGAAGCTAATTTTTCAATTTATCCTCCTCCTCATCAACAACAACAATACTTGTCTTCTTCTTCTTCGTCTCAATCTCATCAGCCAGCGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAAGCACAAGTGATTGCCTTGTCTCCAAACACTCTTTTAGCAACAAACAGGTTCATATGCGAGATCTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTACATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACGAGCAAAGAGATAATAAGGAAGAAGGTGTATGTGTGTCCAGAACCAACGTGCGTTCACCATGACCCTTTAAGAGCACTTGGAGACCTAACAGGGATCAAGAAGCACTTTCGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAGGTACGCTGTTCAATCTGATTGGAAGGCTCACTCCAAAACCTGCGGCACAAGAGAGTACAAATGTGACTGTGGCGTTCTCTTCTCTAGGAGGGACAGTTTCATAACTCACAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGATCATCATCATCAGGAAACCACCAAGTTCTTGTTCCCTCATCACAACCACCCCTAAACAATTCTTATACTAATAATAATCTCCAAACCCGGTTCTTGAAAAACGAGGTCACTCTCACTTCTAGTTCTTCTTCTTCTTCTAGTCTCATCAGGCAAGGCATTCAGATTCCCTCTTGGCTTGGTGGGCCCCCCACTAATTCTCAGCTTCATCATCTTCTTAGCCATGAAAGTCCAAACACTAACCCTAGTAGCCTGGGCCCTACCACCACCACCACCACCACTAGTTTTCTTCCAGGTCCAGCTCCTTATTCTTCCCACATGTCAGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATCGGTTCAACCCTCAGCAAAACCGGTTCACCCATCCTCAGGACCCACACCAACCCTACCCATCACGTGTCTGCTGCTTTGAATCCTCAAGGTCACGTGAGCATCACGACCACCCATGGCTTCTTGTCTCCTTCCTCTTCTTCTACTTCTGATTTCGACGAGGCTTTGATTATTAATGGTGGGATTTTGAATAATCCCTTCAAGAAAGATGCCGACAACTTGCACCGCGGCCACAGTGATCTTTTCAGAGCAACCGACTCCGGCAGTGGCAGCAGGAGAACAGGCAGCGGCGGCGTTGGGAACGTGGAGGGTTTGACGAGAGATTTCTTGGGTCTTAAACCTCTTTCCCATAATGAGATTCTCACCATGGCTGGTTTTGGAAACTGCATGAGCTCCTCTACTTCTTCCTCCCACCATGATCAACCAATTCGTCAATTCCAATGGCAAGCTTAA 1476 0.4627 MFEKKIDVVLDPCSTFINRNMSNLMNCSSSAEANFSIYPPPHQQQQYLSSSSSSQSHQPAKKKRNLPGNPDPEAQVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIIRKKVYVCPEPTCVHHDPLRALGDLTGIKKHFRRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGVLFSRRDSFITHRAFCDALAEESARSSSSGNHQVLVPSSQPPLNNSYTNNNLQTRFLKNEVTLTSSSSSSSSLIRQGIQIPSWLGGPPTNSQLHHLLSHESPNTNPSSLGPTTTTTTTSFLPGPAPYSSHMSATALLQKAAQIGSTLSKTGSPILRTHTNPTHHVSAALNPQGHVSITTTHGFLSPSSSSTSDFDEALIINGGILNNPFKKDADNLHRGHSDLFRATDSGSGSRRTGSGGVGNVEGLTRDFLGLKPLSHNEILTMAGFGNCMSSSTSSSHHDQPIRQFQWQA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00454 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Accr6g00454 491 MobiDBLite consensus disorder prediction 288 325 - -
Accr6g00454 491 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Accr6g00454 491 Gene3D Classic Zinc Finger 69 136 - -
Accr6g00454 491 SUPERFAMILY beta-beta-alpha zinc fingers 89 187 IPR036236 -
Accr6g00454 491 MobiDBLite consensus disorder prediction 423 442 - -
Accr6g00454 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 472 IPR031140 -
Accr6g00454 491 MobiDBLite consensus disorder prediction 472 491 - -
Accr6g00454 491 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Accr6g00454 491 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Accr6g00454 491 SMART c2h2final6 132 162 IPR013087 -
Accr6g00454 491 SMART c2h2final6 90 112 IPR013087 -
Accr6g00454 491 SMART c2h2final6 167 187 IPR013087 -
Accr6g00454 491 MobiDBLite consensus disorder prediction 226 249 - -
Accr6g00454 491 MobiDBLite consensus disorder prediction 42 74 - -
Accr6g00454 491 FunFam protein indeterminate-domain 12-like 69 138 - -
Accr6g00454 491 Gene3D Classic Zinc Finger 147 225 - -
Accr6g00454 491 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00454 Accr-Chr6 9241935 9244736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00454 17 476 IDZ Gene Family AT1G55110 47.182 7.97e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr6g00454 zf-C2H2_jaz 7.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00454 K25870 - gmx:100819692 426.017