LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr6g00442	ATGGCGATTTTTGCTACTTCTTCCCAAGTTCCTCAAGAAAGATATGATGTTTTTATCAGTTTTAGAGGTTCAGCCATTAGACATGGATTTCTAAGCCATTTGACCAAGCAGTTACGGCAAGAGAGGATAGATGTCTATGTGGATGAGAGGCTAGAGAGGGGAGATGAAATATCTTCTGCGCTTCTTGAGGCAATAGAAAGATCAACAATTGCGCTGGTGATGATATTCTCAAAAGACTACGCTTCTTCAAGGTGGTGCTTAGAAGAGCTAGTAAAAATCATGAAATGCAAGGAAGTCAATAGTCAGATTGTAATTCCACTTTTCTATAATATTGACCCATCACTTGTCAGGCATCAAGAAGGAACATATGCAGATGCATTTGCTCAACATGAGCAAAAGTTCGAAGATGACTTATTGCAAATTTGGAGATCTGTCTTGAAAGAAGTAGCAAACTTATCTGGTTATCATTCATCAAATATTACCGATGAATCCGATCTTATTGATCGAATAATCAAAGACTTGTGGAAAAAATTGGAAGATAAAAACACAATTGAGCCGAAGCGCCTCATGATTGGATTTGAGAAAATTTTGACTACTATTGAATCATTTATGAAAGTTGACTCACAAGAAGTTGGACTTCTTGGGATTTGGGGTAAAGGAGGGATGGGTAAAACAACAATAGCTCAAGTCGTATTTGACAAATTTTGCCGCCAATTTGATTGTTCTTATTTTGCATCAAATGTGAGAGAGGAGTCGAAAAAGCTTGGATTGACTTGTGTGCTTGAAAAAATACTGTCTGTACTACTAAACGACAAAAATCTCACACTGAAAGGCAGACCCAATGCTCAAAGGAGGCTACGCCGAGCAAGAGTCCTTCTAGTGCTTGATGATGTAGACACCTCTAGGCAATTAAAGTATCTCATTGAAGAAAATCTTTCATTGGGACCAAGTAGCAAAGTGATCATAACAAGTAGAGACAGGCATGTTTTGGTCAGTGGAGGAGTTAATGTAGTACATGAGGTGGAAGAATTAAACGAGGAAGAGTCACTCCAACTTTTCTGTTGGCATGCTTTCAAGCAAGCCTATCCCAAAATGGGATACGAAAAGTTATCAATGCAGGCAATTCAATATGCCGGAGGCCTTCCTCTAGCATTACAAGTTTTGGGTTCATATTTGAACTCTAGAGATACAAAAACATGGGATAGTGCCCTTAAGAAACTCAGAAAGCATCCCAATGTGGAAGTTCAAACTGTATTGAGGGTAAGTTTTGATGGACTTGATATACTAGAAAAGAGGATATTTTTAGACATTGCATTCTTCTTTAAAGGAGAAAAGAAAGAAGATACTATAAGGATGTTAGATGCTTGCGATGATTTCTACTCGGATTGTGGAATAGATAACCTCATAGATAAAGCTCTCATAACCATTTCAAGAGGCAATACAGTAGAAATTCATGATTTACTACATGAAATGGCTAAAGATATAGTTCGTGAGGAGTCTATCGGAGATCCTGGAAGACGAAGTCGACTAAATGATGCAAAGGAAATTCAAGATGTATTGAAAAATAACAAGGGAACGGATGCAATTGAAGGCATTACATTGGAGTTTGAAATTCTACACTTGAACGCTGAATCTTTCCAGGAAATGAGTAATTTAAGATTTCTCAAGATCCAACATCCTCAATCTCGATTGAAGACTTTAGATGATTATCTCAAATATACTCCTACCATTTATTCTCCTCATGGACTGAACTCACTTTCAAATAAATTAAGGTATTTTTATTGGGATATGTATCCTTTCGAGGCTCTACCATTGGGTTTTTGTCCAGAAAAACTTGTTGAAATCTATTTGGGGGCTAGCAAAATAAAAAAACTATGGAATGGAGTGCAGGATCTAATGAATTTGAAGATAATATATCTCTGCCACTCAATTGAGTTAAAGGAGTTGCCTGATTTCTCCAACGCATGTAACCTTGAGATAGTGGACCTCACAGGTTGTTCTAATTTGCGTGGTATTCATCCATCTATCTTATCTCTCCCTAAACTTGTTTCTTTGAATCTAAGCTCTTGCCACAAGCTAAAGAATCTTCACGGGAAAAATCATTTGAAATCTCTCAAGCATCTCAAGCTGAATAATTGCTCAAGACTCGAGGAATTTTTGTTATCATCAGAAGAAATGAGAAGTTTAGATTTATCTTCCACTAGCATCAAAACATTAAACTTGCCAGTTGGTCGGTTCGATAAACTAGAAGATCTAACTCTCGGTCGGCCTCTCAAGAGCTTTCAAATAAATGAGCTAAGTCGTTTGAAATCTCTTAAAAAATTCTCTCTTTCTTATTTTAGAGGAGTACTTGAAAAATCAAAATTACAAATTCTGTTTTATGCCTGGCCTTCTTTAGAAGAATTGCATTTGGAATACTGTGAGGTTTCAGAGATCCCTGAAAATATCAGTAGCCTGTCATTGTTGAAGATTCTATCACTACGAGGATGCAACATAGAGAGTTTCCCTCATAGCATCAAGCATCTTTCAGAGCTGAAACAAATTAATTTGGTTGAATGCGGGAGGCTTAGAACCTTACTTGAACTTCCATCTTCCATTACTCATTTTTATGTAAGTGAATGCACATCATTGGAGACCATGGATTTCACACCGATGAGAGCAATATATAACAACGCTGGTGAGGTTAAAGTTTGTTACCCAGGAATTACAATTCCAAAGGGCTTCATATATTCTCAGAACAATTTCATTACTATTGAGCTTGCCCCACCTTCTTCTTCAGACCATTTGTTGGGTTTTGTTTGTTGTTGTATTCTTTCTCGAAACGAAATCTTTGACGATTATCCTCGCAGTCAATTGGCAATTTGCAGACAATTCCACTTTGAAGATGATGAGATCAATTACAAGGATGAAATGGAATTCCCTCACCTCTGGAAAATGCAGAGAGATCATGTTTTTGCATGGTATGATCCAATGGAACAAATATTAAAGGGAACTCAAAGACGGAGATATGATGAGGGCACCACCTATAAGTTTGCATGTGAATTTTTCATCAGTCTCGCTTTTTATCGTTGGCCCTCTTTTGATCCCTTGATAAAAGCGTGCGGACTTTGCCCAATATATGCATCAGAATTACAAGAGACAGTTCAACACATGGAATTAAAGCTAGAGATGGGTACAGAAACTGAGATGCCACAAGCATCCAACGTTATTCAAAGATCGAGGAACTCGAGTTGGATGCCCAGCTTTTTGAGAAACGCTTGA	3261	0.3757	MAIFATSSQVPQERYDVFISFRGSAIRHGFLSHLTKQLRQERIDVYVDERLERGDEISSALLEAIERSTIALVMIFSKDYASSRWCLEELVKIMKCKEVNSQIVIPLFYNIDPSLVRHQEGTYADAFAQHEQKFEDDLLQIWRSVLKEVANLSGYHSSNITDESDLIDRIIKDLWKKLEDKNTIEPKRLMIGFEKILTTIESFMKVDSQEVGLLGIWGKGGMGKTTIAQVVFDKFCRQFDCSYFASNVREESKKLGLTCVLEKILSVLLNDKNLTLKGRPNAQRRLRRARVLLVLDDVDTSRQLKYLIEENLSLGPSSKVIITSRDRHVLVSGGVNVVHEVEELNEEESLQLFCWHAFKQAYPKMGYEKLSMQAIQYAGGLPLALQVLGSYLNSRDTKTWDSALKKLRKHPNVEVQTVLRVSFDGLDILEKRIFLDIAFFFKGEKKEDTIRMLDACDDFYSDCGIDNLIDKALITISRGNTVEIHDLLHEMAKDIVREESIGDPGRRSRLNDAKEIQDVLKNNKGTDAIEGITLEFEILHLNAESFQEMSNLRFLKIQHPQSRLKTLDDYLKYTPTIYSPHGLNSLSNKLRYFYWDMYPFEALPLGFCPEKLVEIYLGASKIKKLWNGVQDLMNLKIIYLCHSIELKELPDFSNACNLEIVDLTGCSNLRGIHPSILSLPKLVSLNLSSCHKLKNLHGKNHLKSLKHLKLNNCSRLEEFLLSSEEMRSLDLSSTSIKTLNLPVGRFDKLEDLTLGRPLKSFQINELSRLKSLKKFSLSYFRGVLEKSKLQILFYAWPSLEELHLEYCEVSEIPENISSLSLLKILSLRGCNIESFPHSIKHLSELKQINLVECGRLRTLLELPSSITHFYVSECTSLETMDFTPMRAIYNNAGEVKVCYPGITIPKGFIYSQNNFITIELAPPSSSDHLLGFVCCCILSRNEIFDDYPRSQLAICRQFHFEDDEINYKDEMEFPHLWKMQRDHVFAWYDPMEQILKGTQRRRYDEGTTYKFACEFFISLAFYRWPSFDPLIKACGLCPIYASELQETVQHMELKLEMGTETEMPQASNVIQRSRNSSWMPSFLRNA	1086

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr6g00442	1086	Gene3D	-	181	337	IPR027417	-
	Accr6g00442	1086	FunFam	Disease resistance protein (TIR-NBS-LRR class)	345	427	-	-
	Accr6g00442	1086	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	180	-	-
	Accr6g00442	1086	Gene3D	-	12	180	IPR035897	-
	Accr6g00442	1086	PRINTS	Disease resistance protein signature	700	716	-	-
	Accr6g00442	1086	PRINTS	Disease resistance protein signature	378	392	-	-
	Accr6g00442	1086	PRINTS	Disease resistance protein signature	285	299	-	-
	Accr6g00442	1086	PRINTS	Disease resistance protein signature	213	228	-	-
	Accr6g00442	1086	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	155	IPR035897	-
	Accr6g00442	1086	Pfam	TIR domain	15	186	IPR000157	GO:0007165
	Accr6g00442	1086	SUPERFAMILY	L domain-like	484	881	-	-
	Accr6g00442	1086	Pfam	NB-ARC domain	204	416	IPR002182	GO:0043531
	Accr6g00442	1086	SMART	till_3	14	152	IPR000157	GO:0007165
	Accr6g00442	1086	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	720	IPR044974	GO:0006952
	Accr6g00442	1086	ProSiteProfiles	TIR domain profile.	13	178	IPR000157	GO:0007165
	Accr6g00442	1086	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	437	IPR027417	-
	Accr6g00442	1086	Gene3D	-	343	427	IPR042197	-
	Accr6g00442	1086	Gene3D	Ribonuclease Inhibitor	535	717	IPR032675	-
	Accr6g00442	1086	Gene3D	Ribonuclease Inhibitor	718	888	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr6g00442	Accr-Chr6	8835442	8839087	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr6g00442	15	880	WRKY Transcription Factor Family	AT4G12020	30.734	4.05e-97	337

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr6g00442	-		-	pcin:129311144	1124