Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00383 ATGGGAAATCAAAAGCACAAGTGGACCGCCGATGAAGAAGAAGCTTTGCTTGCCGGCATTAAGAAGCATGGCCACGGCAAGTGGAAGAATATCCTCAAAGATCCCGAATTTGCCCGCTTTCTCACTCACCGCTCCAATATCGATCTTAAGGATAAATGGAGAAATTTAAATGTTAGTACTGCTGCTCAAGGAGGATCTAAAGAAAAAGCCAAGAATGTAAAGATTAAGACTACGGAACCTGCTACACCTGCGGGCACGCAAAATGCTTCTGTGGCTACTCCACTTCGTCAATGTGCATCTTCTGATGCCGTCACAGATGATTCTTCTCACAATGTACAGGAGGTCAAACAAGCTCCACAGTACAATGCAATGATTTTTGAAGCCCTATCAACGTTGAGAGATTCCAATGGGTCTGACCTAAATGCTATTGTTAGCTTTATTGAGCAAAAGCACGAGGTTTCTCAAAATTACAGACGAGCAGTAGGTGCAAGGTTGAGAAAGCTTGTTGATCAAGGAAAACTTGAAAAGGTACTAAATCGTTACAGGATAAAGAGAGCGACGACACCTGTGGAGACAAAACCACCTGCACCAAAACAAATCAATTCCATGCCACGCCAATCACCGGCCTCAGGCATTACCGCATCTCATGAATTGGTAATGGATGCTGTGGAGATTGCAGCATACAGAGTTGCTGAAGCAGAGCACAAATCACATTGGGCTGCTGAAGCAACTAAGGAGGCAGAAAAATTCTCCAAGTTGGCCGAAGATGCTGATGCAATGTTACAGCTAGCCAAAGAGATTTATGAGCAATGCTCACGTGGTGAAATCATTCTCTTGGCTTAA 843 0.4413 MGNQKHKWTADEEEALLAGIKKHGHGKWKNILKDPEFARFLTHRSNIDLKDKWRNLNVSTAAQGGSKEKAKNVKIKTTEPATPAGTQNASVATPLRQCASSDAVTDDSSHNVQEVKQAPQYNAMIFEALSTLRDSNGSDLNAIVSFIEQKHEVSQNYRRAVGARLRKLVDQGKLEKVLNRYRIKRATTPVETKPPAPKQINSMPRQSPASGITASHELVMDAVEIAAYRVAEAEHKSHWAAEATKEAEKFSKLAEDADAMLQLAKEIYEQCSRGEIILLA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00383 280 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Accr6g00383 280 Pfam linker histone H1 and H5 family 119 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr6g00383 280 Gene3D - 8 83 - -
Accr6g00383 280 SUPERFAMILY "Winged helix" DNA-binding domain 118 184 IPR036390 -
Accr6g00383 280 MobiDBLite consensus disorder prediction 62 93 - -
Accr6g00383 280 CDD SANT_TRF 6 57 - -
Accr6g00383 280 MobiDBLite consensus disorder prediction 190 210 - -
Accr6g00383 280 FunFam Telomere repeat-binding factor 1 2 58 - -
Accr6g00383 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Accr6g00383 280 Gene3D - 113 200 IPR036388 -
Accr6g00383 280 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr6g00383 280 MobiDBLite consensus disorder prediction 79 93 - -
Accr6g00383 280 PANTHER SINGLE MYB HISTONE 4 1 279 IPR044597 GO:0003691
Accr6g00383 280 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Accr6g00383 280 SMART sant 4 59 IPR001005 -
Accr6g00383 280 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Accr6g00383 280 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00383 Accr-Chr6 6390480 6393734 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00383 1 279 Single Myb Histone (SMH) Gene Family AT1G17520 47.931 4.50e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr6g00383 Linker_histone 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00383 K09422 - jre:109002017 342.813