Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00348 ATGGACCCGCGAGCAAATGGTAATCCTCGTACTGTTGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAGGTGCAATGATTAAAGCCCTCACATCGGAGGTTGAAGATTTTTACAACCAATGTGACCCTGAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAGTGGGAAGTGAACCTGCCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTCGCAGTCCACAGTGATACATGGTTACTTTCAGTGGCCTTTTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAGACGACTTTTCAATATGATCAATGAACTGCCAACAATTTTTGAAGTTGTCACTGGTACAGTGAAGAAAGAAGGGAAGGAGAAGTCTTCAAATCAAGGCAACAACAAATCTAAGTCTGGTTCTAAGATGAGAGCTTCAGAAGGTCAAGGTAGACAATCGAAGTTGCCGCCTCCAAAAGATGAGGATGAAGTTCCAGAGGAGGAAGATGAAGATGGTGAACATGGGGATACTCCTTGTGGAGCATGCGGCGAGGGTAACGGTGCTGATGAGTTCTGGATTTGCTGTGACATCTGCGATACGTGGTTCCATGGCAAATGTGTGAAGGTTACTAAAGCAAGGGCAGAGCATATCAAGCATTACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGCTGA 759 0.4532 MDPRANGNPRTVEEVFRDFKGRRGAMIKALTSEVEDFYNQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRRRLFNMINELPTIFEVVTGTVKKEGKEKSSNQGNNKSKSGSKMRASEGQGRQSKLPPPKDEDEVPEEEDEDGEHGDTPCGACGEGNGADEFWICCDICDTWFHGKCVKVTKARAEHIKHYKCPSCSNKRARC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00348 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Accr6g00348 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Accr6g00348 252 MobiDBLite consensus disorder prediction 143 197 - -
Accr6g00348 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Accr6g00348 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Accr6g00348 252 FunFam PHD finger alfin-like protein 191 247 - -
Accr6g00348 252 SMART PHD_3 198 246 IPR001965 -
Accr6g00348 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Accr6g00348 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Accr6g00348 252 MobiDBLite consensus disorder prediction 152 168 - -
Accr6g00348 252 CDD PHD_AL_plant 198 248 IPR044104 -
Accr6g00348 252 Pfam PHD-finger 199 248 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00348 Accr-Chr6 5471703 5475177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00348 8 251 Alfin-like Transcription Factor Family AT3G42790 71.311 3.08e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Accr6g00348 Alfin 3.6e-67 No_clan