Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00347 ATGGACCCGCGAGCAAATGGTAATCCTCGTACTGTTGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAGGTGCAATGATTAAAGCCCTCACATCGGAGGTTGAAGATTTTTACAACCAATGTGACCCTGAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAGTGGGAAGTGAACCTGCCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTCGCAGTCCACAGTGATACATGGTTACTTTCAGTGGCCTTTTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAGACGACTTTTCAATATGATCAATGAACTGCCAACAATTTTTGAAGTTGTCACTGGTACAGTGAAGAAAGAAGGGAAGGAGAAGTCTTCAAATCAAGGCAACAACAAATCTAAGTCTGGTTCTAAGATGCAGAGAGCTTCAGAAGGTCAAGGTAGACAATCGAAGTTGCCGCCTCCAAAAGATGAGGATGAAGTTCCAGAGGAGGAAGATGAAGATGGTGAACATGGGGATACTCCTTGTGGAGCATGCGGCGAGGGTAACGGTGCTGATGAGTTCTGGATTTGCTGTGACATCTGCGATACGTGGTTCCATGGCAAATGTGTGAAGGTTACTAAAGCAAGGGCAGAGCATATCAAGCATTACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGCTGA 762 0.4541 MDPRANGNPRTVEEVFRDFKGRRGAMIKALTSEVEDFYNQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRRRLFNMINELPTIFEVVTGTVKKEGKEKSSNQGNNKSKSGSKMQRASEGQGRQSKLPPPKDEDEVPEEEDEDGEHGDTPCGACGEGNGADEFWICCDICDTWFHGKCVKVTKARAEHIKHYKCPSCSNKRARC 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00347 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Accr6g00347 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Accr6g00347 253 FunFam PHD finger alfin-like protein 192 248 - -
Accr6g00347 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Accr6g00347 253 MobiDBLite consensus disorder prediction 152 171 - -
Accr6g00347 253 SMART PHD_3 199 247 IPR001965 -
Accr6g00347 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Accr6g00347 253 CDD PHD_AL_plant 199 249 IPR044104 -
Accr6g00347 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Accr6g00347 253 MobiDBLite consensus disorder prediction 143 198 - -
Accr6g00347 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Accr6g00347 253 Pfam PHD-finger 200 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00347 Accr-Chr6 5471703 5475177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00347 8 252 Alfin-like Transcription Factor Family AT3G42790 71.020 2.12e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Accr6g00347 Alfin 3.7e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00347 K26274 - zju:107403591 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr7g00539 7 7638994 7643249 Accr6g00347 6 5471703 5475177 CCT
Accr6g00347 6 5471703 5475177 Accr7g00539 7 7638994 7643249 ECH
Accr6g00347 6 5471703 5475177 Accr6g00347 6 5471703 5475177 ECH