Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00346 ATGGGAGCTCTTCCACAACAATGTTTGAATACTAGGCTGTTTAGTTTTCCATTTCAAGAACGTTACTCATCGTCAACCCAACCAAATGATCAATCTGATCCTAAAGGTGTTTCAGCTAACTCAGGTCCTTCAGATGGAAAGTGCTTCAGAGATCTCATCAGGTCGCATGTAGGGAGGCAGGATTTTGCCTTTCCTTCTTCACTTCTGGATCATAACAAATCAATGATTCATCATTCTCAACTAATGGGAATGGCTCCTCCACTTCGAGTTCCACTTCCCCTCGACCTCACAGAAGAACCCATATTTGTGAATGCAAAACAATATCATGCAATTCTGAGGCGAAGACAGTATCGATCAAAACTCGAATCACAGAACAAGCTCAACAAAACCCGAAAACCATATCTTCACAAATCTCGCCACCTACATGCACTGAAGAGAGCTAGAGGTTCCGGTGGACGCTTTCTTAACACCAAAAATCTCCAAGAATCATCATCATCAGAACTACCTCCAGCATTGAATAAGCTGACTGTTACTTCACCAGAATCTGAATTTATTGGGTTACAAAATTGCAGAGACGGTTCCGATGTGACGGGCGCTTCTAACAGCGACAAAATCTTCCAGCAACAACATGAATCGAATTCGAGGTTGTGTGGAAGATATCATCCTCACGTTCGAAGCAATATGCAAAGTTTCTCAGTTGATATGAGTGGCGGTGATGAGAATAAGCATAGTGTATCTGTCTTCATGTGGCAAGATTTGAAAAAGGGAAGTTAA 774 0.4199 MGALPQQCLNTRLFSFPFQERYSSSTQPNDQSDPKGVSANSGPSDGKCFRDLIRSHVGRQDFAFPSSLLDHNKSMIHHSQLMGMAPPLRVPLPLDLTEEPIFVNAKQYHAILRRRQYRSKLESQNKLNKTRKPYLHKSRHLHALKRARGSGGRFLNTKNLQESSSSELPPALNKLTVTSPESEFIGLQNCRDGSDVTGASNSDKIFQQQHESNSRLCGRYHPHVRSNMQSFSVDMSGGDENKHSVSVFMWQDLKKGS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00346 257 MobiDBLite consensus disorder prediction 22 44 - -
Accr6g00346 257 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 44 215 IPR001289 GO:0003700|GO:0006355
Accr6g00346 257 MobiDBLite consensus disorder prediction 22 39 - -
Accr6g00346 257 SMART cbf3 96 157 IPR001289 GO:0003700|GO:0006355
Accr6g00346 257 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 99 154 IPR001289 GO:0003700|GO:0006355
Accr6g00346 257 Gene3D - 97 158 - -
Accr6g00346 257 ProSiteProfiles NF-YA/HAP2 family profile. 97 157 IPR001289 GO:0003700|GO:0006355
Accr6g00346 257 PRINTS CCAAT-binding transcription factor subunit B signature 131 154 IPR001289 GO:0003700|GO:0006355
Accr6g00346 257 PRINTS CCAAT-binding transcription factor subunit B signature 100 122 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00346 Accr-Chr6 5463153 5465544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00346 89 249 CCAAT-HAP2 Transcription Factor Family AT1G17590 50.877 4.41e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Accr6g00346 CBFB_NFYA 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00346 K08064 - gmx:100500765 228.024