Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00345 ATGAAGTGCTCATGTAAGATAGATTTTGGCCCATGTTCTACTCATTCAACATCTCCTGATTCTCTTGGATGCTCATCGTTGAAAACCTTATCTCGATTTCATGGACAAGAAGAATCACCAATATCCGAAAGCTTAAGCTTAAAAATGGGAGCTCTTCCACAACAATGTTTGAATACTAGGCTGTTTAGTTTTCCATTTCAAGAACGTTACTCATCGTCAACCCAACCAAATGATCAATCTGATCCTAAAGGTGTTTCAGCTAACTCAGGTCCTTCAGATGGAAAGTGCTTCAGAGATCTCATCAGGTCGCATGTAGGGAGGCAGGATTTTGCCTTTCCTTCTTCACTTCTGGATCATAACAAATCAATGATTCATCATTCTCAACTAATGGGAATGGCTCCTCCACTTCGAGTTCCACTTCCCCTCGACCTCACAGAAGAACCCATATTTGTGAATGCAAAACAATATCATGCAATTCTGAGGCGAAGACAGTATCGATCAAAACTCGAATCACAGAACAAGCTCAACAAAACCCGAAAACCATATCTTCACAAATCTCGCCACCTACATGCACTGAAGAGAGCTAGAGGTTCCGGTGGACGCTTTCTTAACACCAAAAATCTCCAAGAATCATCATCATCAGAACTACCTCCAGCATTGAATAAGCTGACTGTTACTTCACCAGAATCTGAATTTATTGGGTTACAAAATTGCAGAGACGGTTCCGATGTGACGGGCGCTTCTAACAGCGACAAAATCTTCCAGCAACAACATGAATCGAATTCGAGGTTGTGTGGAAGATATCATCCTCACGTTCGAAGCAATATGCAAAGTTTCTCAGTTGATATGAGTGGCGGTGATGAGAATAAGCATAGTGTATCTGTCTTCATGTGGCAAGATTTGAAAAAGGGAAGTTAA 918 0.4129 MKCSCKIDFGPCSTHSTSPDSLGCSSLKTLSRFHGQEESPISESLSLKMGALPQQCLNTRLFSFPFQERYSSSTQPNDQSDPKGVSANSGPSDGKCFRDLIRSHVGRQDFAFPSSLLDHNKSMIHHSQLMGMAPPLRVPLPLDLTEEPIFVNAKQYHAILRRRQYRSKLESQNKLNKTRKPYLHKSRHLHALKRARGSGGRFLNTKNLQESSSSELPPALNKLTVTSPESEFIGLQNCRDGSDVTGASNSDKIFQQQHESNSRLCGRYHPHVRSNMQSFSVDMSGGDENKHSVSVFMWQDLKKGS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00345 305 MobiDBLite consensus disorder prediction 70 87 - -
Accr6g00345 305 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 74 263 IPR001289 GO:0003700|GO:0006355
Accr6g00345 305 MobiDBLite consensus disorder prediction 70 92 - -
Accr6g00345 305 PRINTS CCAAT-binding transcription factor subunit B signature 179 202 IPR001289 GO:0003700|GO:0006355
Accr6g00345 305 PRINTS CCAAT-binding transcription factor subunit B signature 148 170 IPR001289 GO:0003700|GO:0006355
Accr6g00345 305 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 147 202 IPR001289 GO:0003700|GO:0006355
Accr6g00345 305 ProSiteProfiles NF-YA/HAP2 family profile. 145 205 IPR001289 GO:0003700|GO:0006355
Accr6g00345 305 SMART cbf3 144 205 IPR001289 GO:0003700|GO:0006355
Accr6g00345 305 Gene3D - 145 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00345 Accr-Chr6 5463009 5465544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00345 6 297 CCAAT-HAP2 Transcription Factor Family AT1G17590 37.126 3.45e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Accr6g00345 CBFB_NFYA 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00345 K08064 - gmx:100500765 253.062