Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00339 ATGGCCCCTGATGCTTCTTCATCCTCAGCTAAATTTTACCTCAAGAAATATGATGTTTTTATCAGCTTTAGGGGTGAAGACACTCGAGCCAACTTCACGAGCCATCTTCATGAAGCTTTCTGCAGAAAACAAATAAGAACATACATAGACTACGAACTTCCCAAAGGAGATGAGATCTCAGCAGCACTCAAGCAAGCAATCGAGGATTCCTATGTATCTGTGGTGGTATTCTCAGAAAAGTATGCTTCTTCAAGATGGTGCTTGGATGAACTCACCCACATACTTCATTGCCAAAAGGTTCAAGAACAGATTGTTATTCCTATCTTTTATAAAGTTGAGCCATCTCATGTAAGAAATCACACTGGCCTTTACGGGCAAGCGTTTGACAATTATGAGATAGACCCGAAGGTCAACCAACAGAAGATGCAAATATGGAAGCATGCTCTTAATGAAGCTGCAAACTTAGCTGGGTATGACTCTCACACATTCAGGAACGAATCTGAACTGATTCAAAAGACTGTCCAGGACATATTGCAAAAGTTGAGTCACAAATACCCACCTGCTGATTTAAAAGGACTTATAGGGATGGATGACAAGTGCGTAGAGATTGAATTTTTGTTAAGAGATTTTAATACCATTGGAATTTGGGGCATGGGGGGCATTGGCAAATCAACCATTGCCAAAACTATATTTGCCAAGTACTCTTCCCATTATGAAGGCTCTTGCTTCTTGGAAACTGTTAGAGAAAAGTCTGAAAATGGACTTGCTGAATTACATTATAAATTTATCTCCTGTTTACTGAAGGAAGAAGGTCCCCGTATTGATCCTTTAACAACTTTTGTTCTATCTAGACTTAGTGGTACAAAAGTTTTTGTTGTTCTTGATGATATCAGTACTGTGGAGCAATTAGAATATTTGGTTGGAGAACCTTTTTGCTTTGGGCCAGGAAGTAAAATTCTCATCACAACTAGGGACAAGCATGTGCTTAGCAAAGGAGTTGATGTAATATATAAGGTTAAGGAATTGGATTTCCACCAATCCCTTGAACTTTTCAGCTTGAATGCCTTCAACTCTAGCCTGCCTGGAATGGGATATGAAAAACTAACAAAAAGCGTAGTTGTTTATACAAAAGGAATTCCATTGGCTTTAAAAGTTTTGGGTTCATATCTCAGTGGCAAAAGTGAAGTTGAATGGAATAGTGCATTAAAAAAACTTGTAAAGATTCCACATGAAGATGTTCAAAAGGTGTTAAGATTGAGTTATGATGGACTAAATCATGAAGAGAAGAACATATTTCTAGAGATTGCATGCTTTTTGAAGGGAATGTTGAAAGAACGTGTGATCACCCTATTGGACAGCTACGACTTCTATGGAGCTATTGGCATAAGAACACTTCATGATAAGGCTCTCATAAAGGCAAATGATCACATGCCTATAGAAATGCATGATCTGATACAAGAAATGGGGTGGGAAATTGTTCGTGAAGAATCTATCAATGAACCTGGAAGACGGAGTCGATTATGGGATTGTGAAGAAATCTATGATGTTTTGGCTAATAATAAGGGGACTAATAAACTTGAAGGCATCATGTTAGATGTGTCTCGAATCAAAGATATACAATTGAATGCCAAAATTTTCAAAAGGATGTCTAATCTGCGGTTTCTCAAATTTTATTCTGATTCAAACCATTGCTCGAGTCATGTATATTTACCAAAAGTTCTTGAGTTTTTGCCTAAAAAAATAAAGTATCTAGAGTGGTATGGATACCCACTTAAATCCCTGCCACCAACTTTTTGTCCTGAAAATCTGGTTGAGCTTCACATGCCTAATAGCCAGGTTCAAAAGCTTTGGGATGGAGTTCAGGATCTTGTGAACTTGAGAGAGATAAACCTTAGTGGATGCAAACAATTGAAGGAGTTGCCAAATTTCTCTAAAGCCTTGAACCTTAAAGGAGTATCTCTTGTTGATTGTGAAAGTTTGCATTATGTTCATTCTTCTATTTTGTCTCTCCACTCGCTTGTTGAATTGGACTTAAGCAGGTGCAAGAGACTCAAGAGTCTGAAAACTGAGTTTCATTTAAAATCTCTACAATACATTCGGGTGGAAGAATGCATAAGCCTCAAGGAATTTTCGGTGTCATCAGAAAAAATAAAGGAGTTGAATCTATGTTACACAGGAATCGAAAATTTGCACTCGTCTGTAGGACGTTCTAGTAATCTGGAAGTGCTGGATCTGTATGGCTTAAGACTGAAGAAGATTCCAAAACAATTATCATGCTTGAGAACATTGGCAATGCTCAGGCTTCCTAATTGTGAAGTGCTTGATAACTCGATGCTACATATGTTATTTGGTGGCTTGCTGTCTCTAACTGTGGTATATTTGACAGATTGTATTCACATAACTGAACTTCCCAACAACACAGAACATCTTTTAAGATTGGAATGTCTCTTCCTATCGAATTGCAGGGGGCTTCGTTCTTTACCGAAACTTCCACCATCCATTGCAACCTTAGATGCCTATAACTGCATGTCATTGGAGATGGTTTCAACTTTTAGACCATTGAACAAGAATGAAAAATACTTCTCATTTATGAAGTGTGTGAAACTGAATGAACAATCAGTTCATAGTATCATTGAAGATGCCTATTCTGTAATCAATGGAGCTACCTGCAGATTTCAACAAGAAAGAGGGACTAAAGGTGGTCGTAGTTTGATTTGCTTTCATGGAAGTGTAGTACCTGAGTGGTTCAGATATCGAACAGATAGAGGTTCAGTCGTTATTGAAGTCCTTCAAGATTCAGACTTGTTGGGTTTTTCTCTCTGCGTGGTTCTTCAGTTTCACTCAGAGAAACCATGCTATGTTGCACTGAACTGTGCGTGCTCCTTGGGAGGTTTTAATGTGGCAAATTTACCGTACAATAATCTGTTTCTTCCTATTATGAATTCTGATCATGTGTACATATGGAATAATGAGTTTGGTTCAGGTGAGATATTGAAGGCGATTGAAAGAAGAAGAGGAAATGAAGAGTTAGCCACTGACATAAAGCTTTGCTTTGAATTCAGTGTTGAGCCTCGTTTTGGGTACGAGGTTGGTAACATAAACGAGGTAGTTGGTATCAAAGAATGTGGGGTGTGTCCAATATACGTCTCAGAATGTCAGAAATTCTGTCCACAAATGACAATGGCGAGGAAGAATAAGAAGAGGCCTCCAGATGTCGATGAACAACAACCACTTATTCAGTTGAAGAAACTCAAGGTTGACTATGATTCTCACACCAACACTTGTCATGATATTGATGAATTGAAGGATCTTTTCATGACAATTAACATCACTTGA 3336 0.3819 MAPDASSSSAKFYLKKYDVFISFRGEDTRANFTSHLHEAFCRKQIRTYIDYELPKGDEISAALKQAIEDSYVSVVVFSEKYASSRWCLDELTHILHCQKVQEQIVIPIFYKVEPSHVRNHTGLYGQAFDNYEIDPKVNQQKMQIWKHALNEAANLAGYDSHTFRNESELIQKTVQDILQKLSHKYPPADLKGLIGMDDKCVEIEFLLRDFNTIGIWGMGGIGKSTIAKTIFAKYSSHYEGSCFLETVREKSENGLAELHYKFISCLLKEEGPRIDPLTTFVLSRLSGTKVFVVLDDISTVEQLEYLVGEPFCFGPGSKILITTRDKHVLSKGVDVIYKVKELDFHQSLELFSLNAFNSSLPGMGYEKLTKSVVVYTKGIPLALKVLGSYLSGKSEVEWNSALKKLVKIPHEDVQKVLRLSYDGLNHEEKNIFLEIACFLKGMLKERVITLLDSYDFYGAIGIRTLHDKALIKANDHMPIEMHDLIQEMGWEIVREESINEPGRRSRLWDCEEIYDVLANNKGTNKLEGIMLDVSRIKDIQLNAKIFKRMSNLRFLKFYSDSNHCSSHVYLPKVLEFLPKKIKYLEWYGYPLKSLPPTFCPENLVELHMPNSQVQKLWDGVQDLVNLREINLSGCKQLKELPNFSKALNLKGVSLVDCESLHYVHSSILSLHSLVELDLSRCKRLKSLKTEFHLKSLQYIRVEECISLKEFSVSSEKIKELNLCYTGIENLHSSVGRSSNLEVLDLYGLRLKKIPKQLSCLRTLAMLRLPNCEVLDNSMLHMLFGGLLSLTVVYLTDCIHITELPNNTEHLLRLECLFLSNCRGLRSLPKLPPSIATLDAYNCMSLEMVSTFRPLNKNEKYFSFMKCVKLNEQSVHSIIEDAYSVINGATCRFQQERGTKGGRSLICFHGSVVPEWFRYRTDRGSVVIEVLQDSDLLGFSLCVVLQFHSEKPCYVALNCACSLGGFNVANLPYNNLFLPIMNSDHVYIWNNEFGSGEILKAIERRRGNEELATDIKLCFEFSVEPRFGYEVGNINEVVGIKECGVCPIYVSECQKFCPQMTMARKNKKRPPDVDEQQPLIQLKKLKVDYDSHTNTCHDIDELKDLFMTINIT 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00339 1111 Gene3D Ribonuclease Inhibitor 691 849 IPR032675 -
Accr6g00339 1111 Gene3D Ribonuclease Inhibitor 520 690 IPR032675 -
Accr6g00339 1111 FunFam Disease resistance protein RPS4 523 715 - -
Accr6g00339 1111 Pfam C-JID domain 907 1051 IPR045344 -
Accr6g00339 1111 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 183 - -
Accr6g00339 1111 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 711 IPR044974 GO:0006952
Accr6g00339 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 433 IPR027417 -
Accr6g00339 1111 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Accr6g00339 1111 Gene3D - 180 336 IPR027417 -
Accr6g00339 1111 Pfam NB-ARC domain 209 421 IPR002182 GO:0043531
Accr6g00339 1111 Pfam TIR domain 16 189 IPR000157 GO:0007165
Accr6g00339 1111 Pfam Leucine Rich Repeat 602 621 IPR011713 -
Accr6g00339 1111 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 158 IPR035897 -
Accr6g00339 1111 SUPERFAMILY L domain-like 481 866 - -
Accr6g00339 1111 SMART till_3 16 155 IPR000157 GO:0007165
Accr6g00339 1111 Gene3D - 14 179 IPR035897 -
Accr6g00339 1111 Gene3D - 342 425 IPR042197 -
Accr6g00339 1111 PRINTS Disease resistance protein signature 376 390 - -
Accr6g00339 1111 PRINTS Disease resistance protein signature 212 227 - -
Accr6g00339 1111 PRINTS Disease resistance protein signature 668 684 - -
Accr6g00339 1111 PRINTS Disease resistance protein signature 284 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00339 Accr-Chr6 5368314 5372546 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00339 15 822 WRKY Transcription Factor Family AT4G12020 34.569 6.76e-111 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00339 - - pcin:129288061 1763.81