Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00313 ATGGCTTCTGAGAGTAATGATTGTATTAAGAGGAAAGTGAAGCCAATTAGAGCCATGACAAATGTGCCTATTAGTAAAGCAGCATGGACACCTGAAGAAGATCGGAAACTAGCTGAGGCTATTTCAGTTCATGGCGCCAAAAGGTGGAAGTCCATTGCATCCAAAGCAGGACTTAATCGGTGTGGTAAGAGTTGTAGGTTGAGATGGTTAAACTATCTCAGACCCAACATCAAGAGGGGAAACATATCAGCACAAGAAGAGGATTTGATTCTTCGCCTTCATAAACTCCTTGGAAACAGGTGGTCTTTAATCGCTGGGAGACTACCAGGCCGAACAGATAACGAGATAAAGAATTATTGGAACTCTCATTTGAGCAAGAAAATAAAGATGAAGGAGAAGCACCCAAATGGGAATTCAACAATAAGACAAGACAACCAACAAAAGGTGGTGGTCATAGAACAGAAGATTCCTCAAGAAGAAGAAGAAGATAAGCAAATCAGAGAAGAGATTCCTACTGAAGAAGCTGAAGGAGACTCGTCATCAAAGCACAGAAGTTTTGATGTGGACGGCTTCTTTGATTTTTCGGTAGAGGAAGGTCCATTGAATCTGGAGTGGGTTGGCCAATTCCTTGAACTTGATGATACAACTCTCCGACTCTTCTTACAATAA 669 0.4155 MASESNDCIKRKVKPIRAMTNVPISKAAWTPEEDRKLAEAISVHGAKRWKSIASKAGLNRCGKSCRLRWLNYLRPNIKRGNISAQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKMKEKHPNGNSTIRQDNQQKVVVIEQKIPQEEEEDKQIREEIPTEEAEGDSSSKHRSFDVDGFFDFSVEEGPLNLEWVGQFLELDDTTLRLFLQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00313 222 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Accr6g00313 222 Gene3D - 27 78 - -
Accr6g00313 222 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Accr6g00313 222 FunFam MYB-related transcription factor 25 78 - -
Accr6g00313 222 CDD SANT 28 73 IPR001005 -
Accr6g00313 222 CDD SANT 83 124 IPR001005 -
Accr6g00313 222 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Accr6g00313 222 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 21 172 - -
Accr6g00313 222 MobiDBLite consensus disorder prediction 154 184 - -
Accr6g00313 222 Gene3D - 83 156 - -
Accr6g00313 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Accr6g00313 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
Accr6g00313 222 SMART sant 78 126 IPR001005 -
Accr6g00313 222 SMART sant 25 75 IPR001005 -
Accr6g00313 222 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Accr6g00313 222 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00313 Accr-Chr6 4941301 4942245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00313 1 196 MYB Transcription Factor Family AT3G13540 45.000 3.54e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr6g00313 Myb_DNA-binding 5.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00313 K09422 - cave:132188282 255.373