Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00310 ATGAGCGATTGGATGGGGTTTTCTCTGACTCCACACTTGAGGATTGATGAAGTGTATGGGAATGGCAGAGAAAACCTAGAAGAAGAACACCGTGCAGGCTATCCTCATCCTTCTCATCATCCTCGTTTGTCGGTTATGCCTTTAAGATCAGATGGCTCTCTCTGTGTTGCCGAAAACCCTTTTAGGCACTCTGGTGCACCTGAAGAATGGAGGTATAATGATGGAGTAGGAGGGGGTAGCTCCAATGATGAAGGTCCAAAGCTTGAAGATTTCTTGGGTTGTTACTCAAACTCATCTGATATTGCTGAAACCAAAGTGTATTGCCAAGGCAGTACACAACAACAAGACCAAGACGAAGACCAGAACCAGAACCAGAACCAGAACTGCCTTTCCAGCAGAATCAATGTGAATGTGGCCCCAAGCTTCAGCACCAACTCTGAGATCGAAGCTAATGGGGAAAATTTCACAAACCCACCTTCCTTAATCCAATCTTTTCATGCATACAGTGATGGTAACCAGAGAGCTTTATTCCCAAATAATGGCATATACAAGTCCTGGTTGGCTCAATCTCAATCTTCTGCTGCTGAAGTAAATGGTTATAACTACCAATCTCTTGCCCTAACTATGAGTCCTAGTGTACCCAACACTCTTTGTGGTGCAATTTCACCTGTTCAAGTGGTGGAAGATGATGGTCGTAAAAGGTCAACGACAAAATCTCTTGCTGCTAGAGAACCTGTGCCTCGCAAATCTATTGATACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTTACAAGGCATAGATGGACTGGAAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGGAAGGAGGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTCGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTACGACTTAGCTGCGCTAAAGTATTGGGGTCCAACTACTCACATAAATTTCCCTCTAACCACATACGAGAGGGAACTGGAAGAGATGAAACACATGACTAGGCAAGAATTTGTGGCCAATCTGAGGAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGGGGCGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTAGGATTGGTAGAGTTGCAGGAAACAAAGACTTGTATCTCGGTACATTTAGCACACAAGAGGAAGCTGCAGAAGCATACGACATTGCAGCAATCAAGTTCAGAGGAACAAGTGCAGTGACCAACTTTGATATAAGTAGGTATGATGTGAAGAGAATATGCTCGAGCTCAACCCTCATTGCCGGAGATCTTGCGAAGAAGTCCCCGAAAGAGTTAGCTCCCGGTGTGATTTCCACCACAGCCAACCAGGCGGCTCATCAGCAACAGCCACAGCCCTTTTTGGCGGTAACAAATGGCGAGCACTCGTCTGATGAGTTGGCCAACATGGTTTGGAATGATAATGGAAACCTCCATGAGAAACAGGTGAATGATCACAGTATTGCCGATAACAGCAAGAATAATAATGACAATGCCAAGAATGCGTCAAAGTCAGAAGGAAGTCCCAAGTGTTCTGTGGGAATGGGAAATGAGTTTGGGGTGAGTGGTACTTCAGAGTTTGGAAATGGGTTCTTCTCGTTGCAGGGGCCAAAGTATAATGATAATGACGACGATAATGATGGGAACAAAGACGACGACAACGGTAATGATAACATGAATAATGAAAACAATCGCATTGGGAACATGGGTCTGGTTCATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1797 0.4463 MSDWMGFSLTPHLRIDEVYGNGRENLEEEHRAGYPHPSHHPRLSVMPLRSDGSLCVAENPFRHSGAPEEWRYNDGVGGGSSNDEGPKLEDFLGCYSNSSDIAETKVYCQGSTQQQDQDEDQNQNQNQNCLSSRINVNVAPSFSTNSEIEANGENFTNPPSLIQSFHAYSDGNQRALFPNNGIYKSWLAQSQSSAAEVNGYNYQSLALTMSPSVPNTLCGAISPVQVVEDDGRKRSTTKSLAAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLTTYERELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKKSPKELAPGVISTTANQAAHQQQPQPFLAVTNGEHSSDELANMVWNDNGNLHEKQVNDHSIADNSKNNNDNAKNASKSEGSPKCSVGMGNEFGVSGTSEFGNGFFSLQGPKYNDNDDDNDGNKDDDNGNDNMNNENNRIGNMGLVHQVPMFALWNE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00310 598 CDD AP2 361 422 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 SMART rav1_2 362 426 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 SMART rav1_2 260 332 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 SUPERFAMILY DNA-binding domain 361 422 IPR016177 GO:0003677
Accr6g00310 598 CDD AP2 259 326 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 MobiDBLite consensus disorder prediction 547 583 - -
Accr6g00310 598 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 506 - -
Accr6g00310 598 PRINTS Ethylene responsive element binding protein signature 402 422 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 ProSiteProfiles AP2/ERF domain profile. 362 420 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 MobiDBLite consensus disorder prediction 503 525 - -
Accr6g00310 598 FunFam AP2-like ethylene-responsive transcription factor 361 422 - -
Accr6g00310 598 ProSiteProfiles AP2/ERF domain profile. 260 326 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 SUPERFAMILY DNA-binding domain 259 327 IPR016177 GO:0003677
Accr6g00310 598 Pfam AP2 domain 361 412 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 Pfam AP2 domain 260 318 IPR001471 GO:0003700|GO:0006355
Accr6g00310 598 FunFam AP2-like ethylene-responsive transcription factor ANT 259 328 - -
Accr6g00310 598 Gene3D AP2/ERF domain 259 328 IPR036955 GO:0003700|GO:0006355
Accr6g00310 598 Gene3D AP2/ERF domain 362 422 IPR036955 GO:0003700|GO:0006355
Accr6g00310 598 MobiDBLite consensus disorder prediction 502 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00310 Accr-Chr6 4829117 4832478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00310 1 451 AP2-EREBP Transcription Factor Family AT1G72570 49.480 1.86e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr6g00310 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00310 K09285 - gmx:100805489 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00310 6 4829117 4832478 Accr6g00310 6 4829117 4832478 ECH