Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00287 ATGCAGAATCCAAGGCTAAAGCAGCACCAGCAGCAAGCTTTGATGCAACAAGCTCTTATGCAACAACAGTCACTCTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAATATTCATCCACAGGTAACTGAGTCCCTGCTTCAGGAACTTTTTGCAAGTAATGGCCCAGTTGAAGGTTGTAAACTTATTCGAAAGGAGAAGTCATCCTACGGATTCATTCACTATTTTGATCGTAGATCAGCTGCTCTTTCCATATTATCTCTCAACGGAAGGCACCTGTTTGGTCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGGCAGAGAGAGGATACATCAGGTCATTACAACGTATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACGGGACGATCAAGAGGGTTTGGATTCGTTTCATTCCGTAATCAACAGGATGCACAAAGCGCTATTAATGATTTGACTGGCAAGTGGCTTGGTAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTTCTAGTGAGGACAAGCAAGGTTCAGACACTAAAAGCGTGGTTGAACTTACAAATGGCACTTCTGAAGATGGTATGGAGACAAGTAACAGCGATGCCCCAGAGAACAATCCGCAATATACTACCGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGGTTGATCTACACCGCCACTTCCATAATCTTGGAGCTGGTGCAATAGAGGAGGTTCGAGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTACAGTACACATGCTGAAGCAGGAATGGCTATTCAGATGGGGAATACCCAGTCTTTTCTCTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCCCCTCCTGCGGCTGCTGCTGCGCCTATGCCTGGTTTCTCGGCGTCCGATCTTCTGGCCTACGAGCGTCAGCTGGCCATGAGCAAGATGGGTGGCGTCCATGCCCTGATGCATCCCCAAGGGCAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTAGCTGCACAACAAATGATGTATTACCAGTGA 1260 0.4762 MQNPRLKQHQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFIHYFDRRSAALSILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSSEDKQGSDTKSVVELTNGTSEDGMETSNSDAPENNPQYTTVYVGNLAPEVTQVDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHAEAGMAIQMGNTQSFLLGKQIKCSWGSKPTPPGTASNPLPPPAAAAAPMPGFSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00287 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Accr6g00287 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 326 IPR000504 GO:0003723
Accr6g00287 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Accr6g00287 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Accr6g00287 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Accr6g00287 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 338 - -
Accr6g00287 419 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Accr6g00287 419 SUPERFAMILY RNA-binding domain, RBD 249 342 IPR035979 GO:0003676
Accr6g00287 419 CDD RRM1_PUB1 56 126 - -
Accr6g00287 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Accr6g00287 419 Gene3D - 138 218 IPR012677 -
Accr6g00287 419 MobiDBLite consensus disorder prediction 239 259 - -
Accr6g00287 419 CDD RRM2_PUB1 138 217 - -
Accr6g00287 419 SUPERFAMILY RNA-binding domain, RBD 51 217 IPR035979 GO:0003676
Accr6g00287 419 SMART rrm2_1 140 213 IPR003954 GO:0003676
Accr6g00287 419 SMART rrm1_1 55 124 IPR000504 GO:0003723
Accr6g00287 419 SMART rrm1_1 261 331 IPR000504 GO:0003723
Accr6g00287 419 SMART rrm1_1 140 213 IPR000504 GO:0003723
Accr6g00287 419 FunFam Oligouridylate-binding protein 1C 237 339 - -
Accr6g00287 419 Gene3D - 238 339 IPR012677 -
Accr6g00287 419 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Accr6g00287 419 Gene3D - 1 137 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00287 Accr-Chr6 4325402 4330403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00287 55 328 Eukaryotic Initiation Factors Gene Family AT1G71770 26.950 8.14e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00287 K13201 - jre:109001962 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00287 6 4325402 4330403 Accr6g00287 6 4325402 4330403 ECH