Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00279 ATGAAGGCCTGTGAAAGTTATAGTGAAGCTGAATGCTCCGATCCTGATTCGATTTCGGATGATTTAGAAGAAGATCCCCATTTTGACATAACCGAAGAAACCTATAACAAGTTTTCCAACCTCTCAATCGAAAAGAACAAGGCTAGGACGAGTGGCCTTTATGGTGAGGTTTCGCGAATGGAGATTGAACCAGAAGAGCAGAAGACTGAAGCTGATCTTCATGAGAATGATGAGAAAAGTTTTGAGAAACTACAAAAAATCTTAGAAGCGAAAGAATGGCAGAAACTAAAAATAACTGAATGCAAGTTATATCTGAGGAAGAATGGGCTGAGATTGACTGGAAATAAGGACACTCTCATTCAGCGAATAAGGGAGCATCTAGAGATTATAAATGGTGGAGGAGAGAGGAAGTACCCGCCTTCTAGCTTTGTTCAGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTCTGTTTGAGCAAAATGTTTACGAAATGTTCAGCGTGGTATCTAGGAGTGCCAGTGGTCCACCATGTGGCAAAAGGATTGTTGCAGGCCGTATAGTGAAGGAAAGCTACGGTGCTGCGAAGCAACAACATACATTTACGATTGAAGTACTGTGGAGCAAGGGAGAGAAGCCACTTCCTCCACTTTATCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAGATGGGATGATGAAGGGAAAAGGCAGAAAATTTTGATGGAAAAACACTCCAGGGGAAATGTTGCAAGGGTCAACAGAGAAGCAAGGATACAAGAGAAGGAGAAGAGGAAAACAATTAGGGAAAACAGGGTTTCCCAAAAGGAGACATCAAGTAACCAATCTCAATCACATCCACCCATGACAAAGTCACAGTATCAACAAGAAGAATCTAGATGCATCAACCCAGTAAAGTCAGAATTTTTTGTTGCCCAAGGCGAAGAAGTTGCAACAAAGCCTCACCAACTTAAAGAGAAACTCATCACTAATGAGAATCAACCTTGCAGTGATATGACAAACAGGGTTGCAGAATGGTCTTTTCAACATCAAGAATTTAGATGCAATAATCCAGCAAAGCCAGAATTTTTCTTTGACCAAGGCGGAAGAGTTGCAACAAGGCCTCACCATTTCAAAGAGAAACTCATTACTACTGAGAATTACCCTTGTAGTGATATGACAAACAGGGTTGCAGAATGGCCTTATCAACATAAAGAATCTAGATTCATCAACCCAGCAAAGCCAGAATTTTTCTTTGGTCAAGGCGAAAGAGTTGCAACAAGACCTCACCATTTAGAGAAACTCATTACTACTGAGAATTACCCTTGCAATGCAATGACAAACAGGTTTGCAGAATGGCCTTACCAAAGAAAACCTTTGACAAACGCTAATTACTTGTTTCCGTTGAACCTAAACAGAGAATCTTTTCCGCAAAAGCAACCTTGCAAATATTATGACCAAGGCAGGTGTCGTTTTGGAGACAAATGCAAATTTTTACATGGTGTGAGATCATAG 1536 0.4076 MKACESYSEAECSDPDSISDDLEEDPHFDITEETYNKFSNLSIEKNKARTSGLYGEVSRMEIEPEEQKTEADLHENDEKSFEKLQKILEAKEWQKLKITECKLYLRKNGLRLTGNKDTLIQRIREHLEIINGGGERKYPPSSFVQNCKGDACTGDVVLFEQNVYEMFSVVSRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQRWDDEGKRQKILMEKHSRGNVARVNREARIQEKEKRKTIRENRVSQKETSSNQSQSHPPMTKSQYQQEESRCINPVKSEFFVAQGEEVATKPHQLKEKLITNENQPCSDMTNRVAEWSFQHQEFRCNNPAKPEFFFDQGGRVATRPHHFKEKLITTENYPCSDMTNRVAEWPYQHKESRFINPAKPEFFFGQGERVATRPHHLEKLITTENYPCNAMTNRFAEWPYQRKPLTNANYLFPLNLNRESFPQKQPCKYYDQGRCRFGDKCKFLHGVRS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00279 511 SUPERFAMILY CCCH zinc finger 485 508 IPR036855 GO:0046872
Accr6g00279 511 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Accr6g00279 511 MobiDBLite consensus disorder prediction 245 305 - -
Accr6g00279 511 PANTHER SAP DOMAIN-CONTAINING PROTEIN 12 509 - -
Accr6g00279 511 Pfam CCCH-type zinc finger 488 508 IPR041367 -
Accr6g00279 511 SUPERFAMILY SAP domain 82 128 IPR036361 -
Accr6g00279 511 MobiDBLite consensus disorder prediction 281 305 - -
Accr6g00279 511 MobiDBLite consensus disorder prediction 1 26 - -
Accr6g00279 511 Gene3D - 450 511 - -
Accr6g00279 511 SMART c3hfinal6 484 509 IPR000571 GO:0046872
Accr6g00279 511 ProSiteProfiles Zinc finger C3H1-type profile. 483 510 IPR000571 GO:0046872
Accr6g00279 511 Coils Coil 257 277 - -
Accr6g00279 511 Gene3D SAP domain 70 139 IPR036361 -
Accr6g00279 511 MobiDBLite consensus disorder prediction 245 280 - -
Accr6g00279 511 Pfam SAP domain 94 127 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00279 Accr-Chr6 4260299 4263585 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr6g00279 SAP 9.4e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00279 - - pcin:129288862 637.491